Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 7
- vacuole 4
- plasma membrane 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY69017 | Canola | extracellular | 87.67 | 84.21 |
| Bra008874.1-P | Field mustard | extracellular | 86.3 | 82.89 |
| CDX97210 | Canola | extracellular | 86.3 | 82.89 |
| CDY53971 | Canola | extracellular | 86.3 | 82.89 |
Protein Annotations
| MapMan:35.2 | EntrezGene:831128 | UniProt:A0A178UD58 | ProteinID:AED91825.1 | ArrayExpress:AT5G12880 | EnsemblPlantsGene:AT5G12880 |
| RefSeq:AT5G12880 | TAIR:AT5G12880 | RefSeq:AT5G12880-TAIR-G | EnsemblPlants:AT5G12880.1 | TAIR:AT5G12880.1 | EMBL:BT010783 |
| EMBL:BT011260 | ProteinID:CAB88252.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 |
| RefSeq:NP_196792.1 | ProteinID:OAO90621.1 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0007095 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0009005 | PO:PO:0009025 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020030 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| UniProt:Q9LXV1 | SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI00000A9007 | SEG:seg | : |
Description
At5g12880 [Source:UniProtKB/TrEMBL;Acc:Q9LXV1]
Coordinates
chr5:-:4068426..4069094
Molecular Weight (calculated)
8305.0 Da
IEP (calculated)
10.320
GRAVY (calculated)
-0.200
Length
73 amino acids
Sequence
(BLAST)
(BLAST)
1: MRRSWPTRLI LLMVLTVVIT MIAAAYGYSS VSSSKHKFPH YKYKAPSPPT TYSPYRYFSP PPVTDSDSAA YVR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.