Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 5
- plastid 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra002403.1-P | |
| Bra006619.1-P | |
| Bra020182.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G12880.1 | Bra002403.1-P | AT5G22290.1 | 21798944 |
| AT5G12880.1 | Bra006619.1-P | AT5G22290.1 | 21798944 |
| AT5G12880.1 | Bra020182.1-P | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX97210 | Canola | extracellular | 100.0 | 100.0 |
| CDY53971 | Canola | extracellular | 100.0 | 100.0 |
| AT5G12880.1 | Thale cress | extracellular | 82.89 | 86.3 |
Protein Annotations
Description
AT5G12880 (E=3e-014) | proline-rich family protein
Coordinates
chrA10:+:14234030..14234260
Molecular Weight (calculated)
8553.2 Da
IEP (calculated)
9.615
GRAVY (calculated)
-0.146
Length
76 amino acids
Sequence
(BLAST)
(BLAST)
1: MRCSWPTRFT FLMVLTVVIA MIAVAYGYSS VSSSNHKFPH YKYKAPLPPT TYSPYRYFSP PPPPPVTDSD SAAYAQ
1: MRRSWPTRLI LLMVLTVVIT MIAAAYGYSS VSSSKHKFPH YKYKAPSPPT TYSPYRYFSP PPVTDSDSAA YVR
Arabidopsis Description
At5g12880 [Source:UniProtKB/TrEMBL;Acc:Q9LXV1]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.