CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, peroxisome

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1
endoplasmic reticulum 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, peroxisome
Any Predictor:	cytosol, endoplasmic reticulum, peroxisome, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67837
CDX70995
CDX71796
CDX78905
CDX88803
CDX89063
CDX92368
CDX98596
CDX99411
CDY01565
CDY09128
CDY35676
CDY41153
CDY48365

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50920.1	CDX67837	AT3G60600.1	21798944
AT3G50920.1	CDX71796	AT3G60600.1	21798944
AT3G50920.1	CDX89063	AT3G60600.1	21798944
AT3G50920.1	CDY41153	AT3G60600.1	21798944
AT3G50920.1	CDY48365	AT3G60600.1	21798944
AT3G50920.1	CDX78905	AT4G19030.1	21798944
AT3G50920.1	CDX98596	AT4G19030.1	21798944
AT3G50920.1	CDX99411	AT4G19030.1	21798944
AT3G50920.1	CDY01565	AT4G19030.1	21798944
AT3G50920.1	CDX70995	AT5G22290.1	21798944
AT3G50920.1	CDX88803	AT5G22290.1	21798944
AT3G50920.1	CDX92368	AT5G22290.1	21798944
AT3G50920.1	CDY09128	AT5G22290.1	21798944
AT3G50920.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28990	Canola	plasma membrane	61.16	62.56
CDX73772	Canola	mitochondrion, plastid	66.96	59.76
AT3G50920.1	Thale cress	plastid	69.2	55.56
CDY34432	Canola	cytosol, plasma membrane, plastid	34.82	54.55
CDY52388	Canola	cytosol, endoplasmic reticulum, golgi	33.93	53.15
CDY45229	Canola	plastid	55.36	46.62
CDY50985	Canola	plastid	55.36	44.29
CDX77963	Canola	cytosol, golgi, peroxisome	45.54	43.59
CDY65309	Canola	plastid	54.46	43.57
VIT_04s0023g02150.t01	Wine grape	plasma membrane	39.73	39.73
Solyc02g062570.2.1	Tomato	golgi, plasma membrane, vacuole	37.95	39.35
GSMUA_Achr10P...	Banana	cytosol, peroxisome, plasma membrane	37.05	36.56
CDX90676	Canola	golgi, peroxisome, plasma membrane	72.77	35.51
Solyc02g062580.2.1	Tomato	plasma membrane	41.07	34.72
PGSC0003DMT400040097	Potato	plastid	40.18	33.96
KRH28718	Soybean	plastid	41.07	31.83
Os02t0704500-01	Rice	plastid	38.84	31.64
KRH76744	Soybean	plastid	40.18	31.47
HORVU6Hr1G068790.1	Barley	mitochondrion	37.95	31.37
PGSC0003DMT400009288	Potato	extracellular, plasma membrane, vacuole	18.75	31.34
TraesCS6B01G299400.1	Wheat	plastid	35.71	29.96
TraesCS6A01G271800.1	Wheat	plastid	36.16	29.67
OQU85552	Sorghum	plastid	35.71	29.2
TraesCS6D01G252100.1	Wheat	plastid	35.27	28.94
Solyc02g084970.2.1	Tomato	plasma membrane, plastid	35.27	28.73
TraesCS6A01G271900.1	Wheat	mitochondrion	34.82	28.68
TraesCS6B01G299500.1	Wheat	plastid	34.38	28.31
Zm00001d017767_P001	Maize	plastid	33.04	26.52
PGSC0003DMT400009294	Potato	cytosol, peroxisome, plasma membrane, plastid	33.48	24.27
Zm00001d051561_P001	Maize	plastid	30.8	21.97

Protein Annotations

EnsemblPlants:CDY28991	EnsemblPlantsGene:GSBRNA2T00041714001	Gene3D:1.20.144.10	GO:A0A078GU08	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:P_Acid_Pase_2/haloperoxi_sf	InterPro:P_Acid_Pase_2/haloperoxidase	PANTHER:PTHR11247	PANTHER:PTHR11247:SF25	PFAM:PF01569
ProteinID:CDY28991	ProteinID:CDY28991.1	SEG:seg	SUPFAM:SSF48317	TMHMM:TMhelix	UniParc:UPI0004EC5EFB
UniProt:A0A078GU08	MapMan:5.2.2.4	:	:	:	:

Description

BnaC07g31970DBnaC07g31970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GU08]

Coordinates

chrLK032229:-:72417..73684

Molecular Weight (calculated)

24460.9 Da

IEP (calculated)

9.784

GRAVY (calculated)

0.569

Length

224 amino acids

Sequence
(BLAST)

001: MAVLVERFAR RDGSEQSGSV EQEGSINGSP EVRHEMVAGR GVEAIVNSLS KWVVSILFAS IILLRHDGTA LWGIIGSVSN SALSVVLKRI LNQARPATTS
101: RTDPGMPSTH AQSISFISVF AVLSVMEWLG TSKVSLFLSF LIIASGLYFI RLRVSQKLHT SSQVVVGAIV GSVFCIFWYT MWNSLLLEAF ESSLVLQISV
201: FLVAAALTLA FATHVVLNWF RNDK

Best Arabidopsis Sequence Match ( AT3G50920.1 )
(BLAST)

001: MAASSSLLLL LHCPTCNFYF DSSSYLKRSR LSSYSSIISR GSPLFVSSFG SMTVKRFSSR VGSRSNDGNE QFGALEQESF INNSSEIRKD LVTGGGIEAI
101: VNRLSKWVVS VLFGSIILLR HDGAALWAVI GSISNSALSV VLKRILNQER PTTTLRSDPG MPSSHAQSIS FISVFAVLSV MEWLGTNGVS LFLSGLILAL
201: GSYFIRLRVS QKLHTSSQVV VGAIVGSLFC ILWYTMWNSL LREAFEASLL VQISVFLFAA TFALAFAAYV VLNWFKDER

Arabidopsis Description

LPPE1Lipid phosphate phosphatase epsilon 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4J220]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.