CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
extracellular 1
mitochondrion 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67837
CDX70995
CDX71796
CDX78905
CDX88803
CDX89063
CDX92368
CDX98596
CDX99411
CDY01565
CDY09128
CDY35676
CDY41153
CDY48365

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50920.1	CDX67837	AT3G60600.1	21798944
AT3G50920.1	CDX71796	AT3G60600.1	21798944
AT3G50920.1	CDX89063	AT3G60600.1	21798944
AT3G50920.1	CDY41153	AT3G60600.1	21798944
AT3G50920.1	CDY48365	AT3G60600.1	21798944
AT3G50920.1	CDX78905	AT4G19030.1	21798944
AT3G50920.1	CDX98596	AT4G19030.1	21798944
AT3G50920.1	CDX99411	AT4G19030.1	21798944
AT3G50920.1	CDY01565	AT4G19030.1	21798944
AT3G50920.1	CDX70995	AT5G22290.1	21798944
AT3G50920.1	CDX88803	AT5G22290.1	21798944
AT3G50920.1	CDX92368	AT5G22290.1	21798944
AT3G50920.1	CDY09128	AT5G22290.1	21798944
AT3G50920.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28991	Canola	cytosol, endoplasmic reticulum, peroxisome	59.76	66.96
CDY28990	Canola	plasma membrane	48.61	55.71
AT3G50920.1	Thale cress	plastid	58.17	52.33
CDX77963	Canola	cytosol, golgi, peroxisome	45.82	49.15
CDY34432	Canola	cytosol, plasma membrane, plastid	27.89	48.95
CDY52388	Canola	cytosol, endoplasmic reticulum, golgi	27.09	47.55
CDY45229	Canola	plastid	50.2	47.37
CDY50985	Canola	plastid	51.0	45.71
CDY65309	Canola	plastid	49.0	43.93
VIT_04s0023g02150.t01	Wine grape	plasma membrane	34.66	38.84
Solyc02g062570.2.1	Tomato	golgi, plasma membrane, vacuole	31.87	37.04
GSMUA_Achr10P...	Banana	cytosol, peroxisome, plasma membrane	30.68	33.92
Solyc02g062580.2.1	Tomato	plasma membrane	35.46	33.58
CDX90676	Canola	golgi, peroxisome, plasma membrane	60.16	32.9
PGSC0003DMT400040097	Potato	plastid	34.26	32.45
HORVU6Hr1G068790.1	Barley	mitochondrion	33.47	31.0
TraesCS6D01G252100.1	Wheat	plastid	33.47	30.77
TraesCS6A01G271900.1	Wheat	mitochondrion	33.07	30.51
TraesCS6B01G299500.1	Wheat	plastid	33.07	30.51
KRH28718	Soybean	plastid	35.06	30.45
KRH76744	Soybean	plastid	34.66	30.42
TraesCS6A01G271800.1	Wheat	plastid	32.27	29.67
TraesCS6B01G299400.1	Wheat	plastid	31.47	29.59
Os02t0704500-01	Rice	plastid	32.27	29.45
OQU85552	Sorghum	plastid	31.87	29.2
PGSC0003DMT400009288	Potato	extracellular, plasma membrane, vacuole	15.14	28.36
Solyc02g084970.2.1	Tomato	plasma membrane, plastid	30.28	27.64
Zm00001d017767_P001	Maize	plastid	29.88	26.88
PGSC0003DMT400009294	Potato	cytosol, peroxisome, plasma membrane, plastid	30.28	24.6
Zm00001d051561_P001	Maize	plastid	29.08	23.25

Protein Annotations

EnsemblPlants:CDX73772	EnsemblPlantsGene:GSBRNA2T00109391001	Gene3D:1.20.144.10	GO:A0A078CA79	InterPro:P_Acid_Pase_2/haloperoxi_sf	PANTHER:PTHR11247
PANTHER:PTHR11247:SF25	ProteinID:CDX73772	ProteinID:CDX73772.1	SEG:seg	SUPFAM:SSF48317	TMHMM:TMhelix
UniParc:UPI0004EE483E	MapMan:5.2.2.4	:	:	:	:

Description

BnaC08g22310D

Coordinates

chrLK031799:+:2675724..2676729

Molecular Weight (calculated)

28243.6 Da

IEP (calculated)

10.724

GRAVY (calculated)

0.507

Length

251 amino acids

Sequence
(BLAST)

001: MRQRITSFQA NNVQRDLNVN FQSHSSIISP SWVFLSLGSM TVLVKRFASN VLSEHWNELV SRGRIESIFN RLCCFKWVVS ALFASIILLR HDGTALWAII
101: GSVSNSALSL FLKRLLNQAR PATTSRTDPG MPSSHAQSIS FISVFAVLSV MEWLGTNEVS LFLIMLILAL GSYFASMRLR VSQKLHTSNQ VVVGGFVGSV
201: FCIFWYKTWN LLLLEAFKSS LLLQIYVFLV ASAYTLAFAA YVVLNSFRHD R

Best Arabidopsis Sequence Match ( AT3G50920.1 )
(BLAST)

001: MAASSSLLLL LHCPTCNFYF DSSSYLKRSR LSSYSSIISR GSPLFVSSFG SMTVKRFSSR VGSRSNDGNE QFGALEQESF INNSSEIRKD LVTGGGIEAI
101: VNRLSKWVVS VLFGSIILLR HDGAALWAVI GSISNSALSV VLKRILNQER PTTTLRSDPG MPSSHAQSIS FISVFAVLSV MEWLGTNGVS LFLSGLILAL
201: GSYFIRLRVS QKLHTSSQVV VGAIVGSLFC ILWYTMWNSL LREAFEASLL VQISVFLFAA TFALAFAAYV VLNWFKDER

Arabidopsis Description

LPPE1Lipid phosphate phosphatase epsilon 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4J220]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.