Factsheet for VIT_04s0023g02150.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g00640.t01
VIT_06s0080g00970.t01
VIT_07s0031g02730.t01
VIT_10s0003g01830.t01
VIT_15s0046g01760.t01
VIT_15s0048g00220.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50920.1	VIT_15s0048g00220.t01	AT3G60600.1	21798944
AT3G50920.1	VIT_10s0003g01830.t01	AT4G19030.1	21798944
AT3G50920.1	VIT_06s0080g00970.t01	AT5G22290.1	21798944
AT3G50920.1	VIT_02s0025g00640.t01	AT5G41600.1	21798944
AT3G50920.1	VIT_07s0031g02730.t01	AT5G41600.1	21798944
AT3G50920.1	VIT_15s0046g01760.t01	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g062570.2.1	Tomato	golgi, plasma membrane, vacuole	52.68	54.63
GSMUA_Achr10P...	Banana	cytosol, peroxisome, plasma membrane	54.02	53.3
Bra012072.1-P	Field mustard	cytosol, peroxisome, plasma membrane	48.66	49.32
PGSC0003DMT400040097	Potato	plastid	58.04	49.06
Solyc02g062580.2.1	Tomato	plasma membrane	57.59	48.68
Bra037170.1-P	Field mustard	cytosol, peroxisome, plasma membrane	47.32	48.62
KRH76744	Soybean	plastid	61.16	47.9
KRH28718	Soybean	plastid	59.38	46.02
Bra006653.1-P	Field mustard	extracellular, plasma membrane	19.64	44.9
Bra031812.1-P	Field mustard	cytosol, peroxisome, plasma membrane	42.86	43.24
CDY45229	Canola	plastid	49.11	41.35
Bra005332.1-P	Field mustard	extracellular	13.84	39.74
CDY28991	Canola	cytosol, endoplasmic reticulum, peroxisome	39.73	39.73
TraesCS6D01G252100.1	Wheat	plastid	48.21	39.56
TraesCS6B01G299500.1	Wheat	plastid	47.77	39.34
Bra028216.1-P	Field mustard	extracellular	13.84	39.24
CDY50985	Canola	plastid	48.66	38.93
Solyc02g084970.2.1	Tomato	plasma membrane, plastid	47.77	38.91
HORVU6Hr1G068790.1	Barley	mitochondrion	46.88	38.75
TraesCS6A01G271900.1	Wheat	mitochondrion	46.88	38.6
CDY65309	Canola	plastid	48.21	38.57
PGSC0003DMT400009288	Potato	extracellular, plasma membrane, vacuole	22.32	37.31
AT3G50920.1	Thale cress	plastid	45.54	36.56
TraesCS6A01G271800.1	Wheat	plastid	44.2	36.26
PGSC0003DMT400009294	Potato	cytosol, peroxisome, plasma membrane, plastid	49.55	35.92
OQU85552	Sorghum	plastid	43.75	35.77
Os02t0704500-01	Rice	plastid	43.75	35.64
TraesCS6B01G299400.1	Wheat	plastid	42.41	35.58
CDX73772	Canola	mitochondrion, plastid	38.84	34.66
CDY52388	Canola	cytosol, endoplasmic reticulum, golgi	21.88	34.27
CDY28990	Canola	plasma membrane	33.48	34.25
Zm00001d017767_P001	Maize	plastid	41.96	33.69
AT5G66450.3	Thale cress	plastid	45.98	33.44
CDY34432	Canola	cytosol, plasma membrane, plastid	20.98	32.87
Zm00001d051561_P001	Maize	plastid	41.07	29.3
CDX77963	Canola	cytosol, golgi, peroxisome	27.23	26.07
Bra036849.1-P	Field mustard	cytosol, golgi, peroxisome	27.23	26.07
CDX90676	Canola	golgi, peroxisome, plasma membrane	37.95	18.52
Bra012879.1-P	Field mustard	golgi, peroxisome, plasma membrane	37.05	18.08

Protein Annotations

Gene3D:1.20.144.10	EntrezGene:100265095	wikigene:100265095	MapMan:5.2.2.4	EMBL:AM473506	ProteinID:CAN70630
ProteinID:CAN70630.1	ProteinID:CBI17482	ProteinID:CBI17482.3	UniProt:D7SPA3	EMBL:FN594959	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629
GO:GO:0006651	GO:GO:0008150	GO:GO:0008152	GO:GO:0008195	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016311	GO:GO:0016787
EntrezGene:LOC100265095	wikigene:LOC100265095	PFAM:PF01569	PANTHER:PTHR11247	PANTHER:PTHR11247:SF25	InterPro:P_Acid_Pase_2/haloperoxi_sf
InterPro:P_Acid_Pase_2/haloperoxidase	SUPFAM:SSF48317	TIGR:TC56366	TMHMM:TMhelix	UniParc:UPI00015CACB7	ArrayExpress:VIT_04s0023g02150
EnsemblPlantsGene:VIT_04s0023g02150	EnsemblPlants:VIT_04s0023g02150.t01	unigene:Vvi.11940	RefSeq:XP_002263902	RefSeq:XP_002263902.1	SEG:seg

Description

No Description!

Coordinates

chr4:-:18625081..18629045

Molecular Weight (calculated)

24573.9 Da

IEP (calculated)

5.178

GRAVY (calculated)

0.661

Length

224 amino acids

Sequence
(BLAST)

001: MTELVRTSAF RNGNDDEGAT MIEEEAFITG SSEFPADIVA GGLEATLNRL SKWLVAALFG IVILWRHDAE SLWAAMGSVL NTVLSVTLKQ ILNQERPVSA
101: LRSGPGMPSS HAQSIFFTVV FTILSVVEWL GINGLTLTIS GLALALGSYL SWLRVSQQFH TISQVLVGSA VGSVFCILWL WSWEAFVLNA YTSYLWVRVL
201: VIVGAVGFCL GFVLHVIKHW LLEE

Best Arabidopsis Sequence Match ( AT5G66450.2 )
(BLAST)

001: MADLVKTNAR RDGEDRFQAL EQEAFISNSS SELQNELVSD AGDGIEAIAN RLSKWIVAAL FGSVLLLRHD GAALWAVIGS VSNSVLSVAL KRILNQERPV
101: ATLRSDPGMP SSHAQSISFI SVFSVFSVME WLGTNVLSLF LSGFILALGS YFTWLRVSQK LHTTSQVVVG AIVGSVYSTL WYVTWNSLVL EAFTSTFSVQ
201: IALFLVAAAS ALGFAVYVLL NWFKDDR

Arabidopsis Description

Phosphatidic acid phosphatase (PAP2) family protein [Source:TAIR;Acc:AT5G66450]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.