CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11076
KRH21197
KRH22653
KRH26664
KRH41254
KRH42923
KRH42926
KRH45251
KRH59035
KRH59036
KRH59988
KRH65384
KRH76164

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50920.1	KRH65384	AT3G60600.1	21798944
AT3G50920.1	KRH76164	AT3G60600.1	21798944
AT3G50920.1	KRH11076	AT4G19030.1	21798944
AT3G50920.1	KRH21197	AT4G19030.1	21798944
AT3G50920.1	KRH42923	AT4G19030.1	21798944
AT3G50920.1	KRH42926	AT4G19030.1	21798944
AT3G50920.1	KRH45251	AT4G19030.1	21798944
AT3G50920.1	KRH59035	AT4G19030.1	21798944
AT3G50920.1	KRH59036	AT4G19030.1	21798944
AT3G50920.1	KRH22653	AT5G22290.1	21798944
AT3G50920.1	KRH26664	AT5G22290.1	21798944
AT3G50920.1	KRH41254	AT5G41600.1	21798944
AT3G50920.1	KRH59988	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28718	Soybean	plastid	91.26	90.31
VIT_04s0023g02150.t01	Wine grape	plasma membrane	47.9	61.16
Solyc02g062570.2.1	Tomato	golgi, plasma membrane, vacuole	38.46	50.93
GSMUA_Achr10P...	Banana	cytosol, peroxisome, plasma membrane	40.21	50.66
PGSC0003DMT400040097	Potato	plastid	45.1	48.68
Bra012072.1-P	Field mustard	cytosol, peroxisome, plasma membrane	37.06	47.96
Bra006653.1-P	Field mustard	extracellular, plasma membrane	16.08	46.94
Solyc02g062580.2.1	Tomato	plasma membrane	43.36	46.79
Bra037170.1-P	Field mustard	cytosol, peroxisome, plasma membrane	33.57	44.04
Bra031812.1-P	Field mustard	cytosol, peroxisome, plasma membrane	33.57	43.24
Bra005332.1-P	Field mustard	extracellular	11.54	42.31
Bra028216.1-P	Field mustard	extracellular	11.54	41.77
CDY45229	Canola	plastid	38.46	41.35
CDY28991	Canola	cytosol, endoplasmic reticulum, peroxisome	31.47	40.18
AT3G50920.1	Thale cress	plastid	39.16	40.14
Solyc02g084970.2.1	Tomato	plasma membrane, plastid	38.46	40.0
CDY50985	Canola	plastid	37.76	38.57
TraesCS6B01G299500.1	Wheat	plastid	36.01	37.87
CDY65309	Canola	plastid	36.36	37.14
TraesCS6A01G271900.1	Wheat	mitochondrion	35.31	37.13
HORVU6Hr1G068790.1	Barley	mitochondrion	34.97	36.9
PGSC0003DMT400009294	Potato	cytosol, peroxisome, plasma membrane, plastid	39.86	36.89
TraesCS6D01G252100.1	Wheat	plastid	34.97	36.63
PGSC0003DMT400009288	Potato	extracellular, plasma membrane, vacuole	17.13	36.57
CDY28990	Canola	plasma membrane	27.97	36.53
Os02t0704500-01	Rice	plastid	34.97	36.36
CDY52388	Canola	cytosol, endoplasmic reticulum, golgi	17.83	35.66
OQU85552	Sorghum	plastid	33.92	35.4
TraesCS6B01G299400.1	Wheat	plastid	32.87	35.21
TraesCS6A01G271800.1	Wheat	plastid	33.57	35.16
Zm00001d017767_P001	Maize	plastid	33.92	34.77
CDX73772	Canola	mitochondrion, plastid	30.42	34.66
AT5G66450.3	Thale cress	plastid	36.01	33.44
CDY34432	Canola	cytosol, plasma membrane, plastid	16.43	32.87
Zm00001d051561_P001	Maize	plastid	31.12	28.34
CDX77963	Canola	cytosol, golgi, peroxisome	22.03	26.92
Bra036849.1-P	Field mustard	cytosol, golgi, peroxisome	22.03	26.92
CDX90676	Canola	golgi, peroxisome, plasma membrane	34.62	21.57
Bra012879.1-P	Field mustard	golgi, peroxisome, plasma membrane	34.27	21.35

Protein Annotations

Gene3D:1.20.144.10	MapMan:5.2.2.4	EMBL:ACUP02000639	EnsemblPlantsGene:GLYMA_01G171800	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0006651
GO:GO:0008150	GO:GO:0008152	GO:GO:0008195	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016311	GO:GO:0016787	UniProt:I1J8S0
EnsemblPlants:KRH76744	ProteinID:KRH76744	ProteinID:KRH76744.1	PFAM:PF01569	PANTHER:PTHR11247	PANTHER:PTHR11247:SF25
InterPro:P_Acid_Pase_2/haloperoxi_sf	InterPro:P_Acid_Pase_2/haloperoxidase	SUPFAM:SSF48317	TMHMM:TMhelix	UniParc:UPI0002336CAF	:

Description

hypothetical protein

Coordinates

chr1:+:50907620..50911733

Molecular Weight (calculated)

31881.8 Da

IEP (calculated)

9.716

GRAVY (calculated)

0.417

Length

286 amino acids

Sequence
(BLAST)

001: MAAATTICYG PSSIVLGSNL LKRRHLKNTS FADRFSPSRS LLCSGFVPRK PALGRNSFWV SKIMDESVGT SAFRDAKGDE TIQVFEQEAF IDGSSPFRFK
101: FLSPEVEYKL NRLSKWIVTA LFGSFILWRH DAEALWFTAG SVLNAMLSVL LKRILNQERP STLKSDPGMP SSHAQSIFFT VFFVILSGVE WLGLNGFTIA
201: ISGLVLTFGS FLSYLRVVQQ LHTVSQVVVG AAIGSISSIL WYWLWNGYML DAFVSSLWVR IIVVLGSAGL CIGFVLFVIR HWLQDD

Best Arabidopsis Sequence Match ( AT5G66450.4 )
(BLAST)

001: MAASSSSLLL LHKPTYNFHF AASSVPTYIN SARFRISSSI FPLDRRRRRR IWSVSGFKSM ADLVKTNARR DGEDRFQALE QEAFISNSSS ELQNELVSDA
101: GDGIEAIANR LSKWIVAALF GSVLLLRHDG AALWAVIGSV SNSVLSVALK RILNQERPVA TLRSDPGMPS SHAQSISFIS VFSVFSVMEW LGTNVLSLFL
201: SGFILALGSY FTWLRVSQKL HTTSQVVVGA IVGSVYSTLW YVTWNSLVLE AFTSTFSVQI ALFLVAAASA LGFAVYVLLN WFKDDR

Arabidopsis Description

Phosphatidic acid phosphatase (PAP2) family protein [Source:TAIR;Acc:AT5G66450]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.