Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY28991 | Canola | cytosol, endoplasmic reticulum, peroxisome | 62.56 | 61.16 |
| CDX73772 | Canola | mitochondrion, plastid | 55.71 | 48.61 |
| AT3G50920.1 | Thale cress | plastid | 55.71 | 43.73 |
| CDY45229 | Canola | plastid | 49.32 | 40.6 |
| CDX77963 | Canola | cytosol, golgi, peroxisome | 43.38 | 40.6 |
| CDY50985 | Canola | plastid | 49.77 | 38.93 |
| CDY65309 | Canola | plastid | 47.49 | 37.14 |
| Solyc02g062570.2.1 | Tomato | golgi, plasma membrane, vacuole | 35.62 | 36.11 |
| CDY34432 | Canola | cytosol, plasma membrane, plastid | 22.37 | 34.27 |
| VIT_04s0023g02150.t01 | Wine grape | plasma membrane | 34.25 | 33.48 |
| CDY52388 | Canola | cytosol, endoplasmic reticulum, golgi | 21.46 | 32.87 |
| Bra012879.1-P | Field mustard | golgi, peroxisome, plasma membrane | 66.67 | 31.81 |
| GSMUA_Achr10P... | Banana | cytosol, peroxisome, plasma membrane | 32.88 | 31.72 |
| Solyc02g062580.2.1 | Tomato | plasma membrane | 38.36 | 31.7 |
| CDX90676 | Canola | golgi, peroxisome, plasma membrane | 65.75 | 31.37 |
| PGSC0003DMT400040097 | Potato | plastid | 37.9 | 31.32 |
| KRH28718 | Soybean | plastid | 36.99 | 28.03 |
| KRH76744 | Soybean | plastid | 36.53 | 27.97 |
| PGSC0003DMT400009288 | Potato | extracellular, plasma membrane, vacuole | 16.89 | 27.61 |
| HORVU6Hr1G068790.1 | Barley | mitochondrion | 33.79 | 27.31 |
| Os02t0704500-01 | Rice | plastid | 34.25 | 27.27 |
| Solyc02g084970.2.1 | Tomato | plasma membrane, plastid | 32.88 | 26.18 |
| OQU85552 | Sorghum | plastid | 32.42 | 25.91 |
| TraesCS6A01G271900.1 | Wheat | mitochondrion | 31.96 | 25.74 |
| TraesCS6D01G252100.1 | Wheat | plastid | 31.96 | 25.64 |
| TraesCS6B01G299400.1 | Wheat | plastid | 31.05 | 25.47 |
| TraesCS6A01G271800.1 | Wheat | plastid | 31.51 | 25.27 |
| Zm00001d017767_P001 | Maize | plastid | 31.96 | 25.09 |
| TraesCS6B01G299500.1 | Wheat | plastid | 31.05 | 25.0 |
| PGSC0003DMT400009294 | Potato | cytosol, peroxisome, plasma membrane, plastid | 33.33 | 23.62 |
| Zm00001d051561_P001 | Maize | plastid | 29.68 | 20.7 |
Protein Annotations
| EnsemblPlants:CDY28990 | EnsemblPlantsGene:GSBRNA2T00041713001 | Gene3D:1.20.144.10 | GO:A0A078GR29 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:P_Acid_Pase_2/haloperoxi_sf | PANTHER:PTHR11247 | PANTHER:PTHR11247:SF25 | ProteinID:CDY28990 | ProteinID:CDY28990.1 |
| SEG:seg | SUPFAM:SSF48317 | TMHMM:TMhelix | UniParc:UPI0004EF3763 | UniProt:A0A078GR29 | MapMan:5.2.2.4 |
Description
BnaC07g31960DBnaC07g31960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GR29]
Coordinates
chrLK032229:-:69057..70191
Molecular Weight (calculated)
23844.4 Da
IEP (calculated)
10.021
GRAVY (calculated)
0.693
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGNNSLCWS SKKLPSMGLQ SSGTNWSLVM GLKPLLIVLH DGTALWGIIG SVSNATLCVV LKRILNQARP ATTSRTDPGM PSSHAQSISY ISLFAILSVL
101: EWLGTSKVSM FLSCLIIASG SYFIRLRVSQ KLHTSSQVVV GAIVGSVFCI FWYTTWNSLL LEAFEASLLL QTSVFLVAAA LTLAFAIFVV LRGVQSGYRF
201: GLGSFFFRFS SHIVNTVIY
101: EWLGTSKVSM FLSCLIIASG SYFIRLRVSQ KLHTSSQVVV GAIVGSVFCI FWYTTWNSLL LEAFEASLLL QTSVFLVAAA LTLAFAIFVV LRGVQSGYRF
201: GLGSFFFRFS SHIVNTVIY
001: MAASSSLLLL LHCPTCNFYF DSSSYLKRSR LSSYSSIISR GSPLFVSSFG SMTVKRFSSR VGSRSNDGNE QFGALEQESF INNSSEIRKD LVTGGGIEAI
101: VNRLSKWVVS VLFGSIILLR HDGAALWAVI GSISNSALSV VLKRILNQER PTTTLRSDPG MPSSHAQSIS FISVFAVLSV MEWLGTNGVS LFLSGLILAL
201: GSYFIRLRVS QKLHTSSQVV VGAIVGSLFC ILWYTMWNSL LREAFEASLL VQISVFLFAA TFALAFAAYV VLNWFKDER
101: VNRLSKWVVS VLFGSIILLR HDGAALWAVI GSISNSALSV VLKRILNQER PTTTLRSDPG MPSSHAQSIS FISVFAVLSV MEWLGTNGVS LFLSGLILAL
201: GSYFIRLRVS QKLHTSSQVV VGAIVGSLFC ILWYTMWNSL LREAFEASLL VQISVFLFAA TFALAFAAYV VLNWFKDER
Arabidopsis Description
LPPE1Lipid phosphate phosphatase epsilon 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4J220]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.