Factsheet for Bra012879.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, plasma membrane

Predictor Summary:

plastid 1
golgi 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002403.1-P
Bra003423.1-P
Bra006619.1-P
Bra007547.1-P
Bra012567.1-P
Bra013361.1-P
Bra014481.1-P
Bra020182.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50920.1	Bra003423.1-P	AT3G60600.1	21798944
AT3G50920.1	Bra007547.1-P	AT3G60600.1	21798944
AT3G50920.1	Bra014481.1-P	AT3G60600.1	21798944
AT3G50920.1	Bra012567.1-P	AT4G19030.1	21798944
AT3G50920.1	Bra013361.1-P	AT4G19030.1	21798944
AT3G50920.1	Bra002403.1-P	AT5G22290.1	21798944
AT3G50920.1	Bra006619.1-P	AT5G22290.1	21798944
AT3G50920.1	Bra020182.1-P	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90676	Canola	golgi, peroxisome, plasma membrane	96.95	96.95
Bra006653.1-P	Field mustard	extracellular, plasma membrane	15.69	73.47
CDY28990	Canola	plasma membrane	31.81	66.67
Bra005332.1-P	Field mustard	extracellular	9.8	57.69
Bra028216.1-P	Field mustard	extracellular	9.8	56.96
Bra012072.1-P	Field mustard	cytosol, peroxisome, plasma membrane	26.58	55.2
Bra037170.1-P	Field mustard	cytosol, peroxisome, plasma membrane	26.14	55.05
AT3G50920.1	Thale cress	plastid	33.33	54.84
Bra031812.1-P	Field mustard	cytosol, peroxisome, plasma membrane	24.84	51.35
Bra036849.1-P	Field mustard	cytosol, golgi, peroxisome	22.44	44.02
Solyc02g062570.2.1	Tomato	golgi, plasma membrane, vacuole	17.86	37.96
VIT_04s0023g02150.t01	Wine grape	plasma membrane	18.08	37.05
GSMUA_Achr10P...	Banana	cytosol, peroxisome, plasma membrane	17.43	35.24
Solyc02g062580.2.1	Tomato	plasma membrane	19.83	34.34
KRH76744	Soybean	plastid	21.35	34.27
KRH28718	Soybean	plastid	21.57	34.26
PGSC0003DMT400040097	Potato	plastid	19.61	33.96
HORVU6Hr1G068790.1	Barley	mitochondrion	18.95	32.1
OQU85552	Sorghum	plastid	18.3	30.66
PGSC0003DMT400009288	Potato	extracellular, plasma membrane, vacuole	8.93	30.6
TraesCS6A01G271900.1	Wheat	mitochondrion	17.86	30.15
TraesCS6D01G252100.1	Wheat	plastid	17.86	30.04
TraesCS6A01G271800.1	Wheat	plastid	17.86	30.04
TraesCS6B01G299400.1	Wheat	plastid	17.43	29.96
Os02t0704500-01	Rice	plastid	17.86	29.82
Solyc02g084970.2.1	Tomato	plasma membrane, plastid	17.65	29.45
TraesCS6B01G299500.1	Wheat	plastid	17.43	29.41
Zm00001d017767_P001	Maize	plastid	17.43	28.67
PGSC0003DMT400009294	Potato	cytosol, peroxisome, plasma membrane, plastid	17.65	26.21
Zm00001d051561_P001	Maize	plastid	16.56	24.2

Protein Annotations

EnsemblPlants:Bra012879.1	EnsemblPlants:Bra012879.1-P	EnsemblPlantsGene:Bra012879	Gene3D:1.20.144.10	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:P_Acid_Pase_2/haloperoxi_sf	InterPro:P_Acid_Pase_2/haloperoxidase	PANTHER:PTHR11247	PANTHER:PTHR11247:SF25	SEG:seg
SMART:SM00014	SUPFAM:SSF48317	TMHMM:TMhelix	UniParc:UPI0002540666	UniProt:M4D8R9	MapMan:5.2.2.4

Description

AT3G50920 (E=1e-078) | phosphatidic acid phosphatase-related / PAP2-related

Coordinates

chrA03:-:21810226..21813969

Molecular Weight (calculated)

50644.5 Da

IEP (calculated)

10.319

GRAVY (calculated)

0.593

Length

459 amino acids

Sequence
(BLAST)

001: MAVLVKKFAR RDGSEQSGSV EQEASINGSQ ELRHEMVTGR GIEAIVNSLS KWVVSILFAS IILLRRDGTA LWGIIGSVSN SALSLVLKRI LNQARPATTS
101: RTDPGMPSTH AQSISFISVF AVLSVMEWLG TSKVSMFLCC LILASCSYFI RLRVSQRLHT SSQVVVGAIV GSVFCILWYT TWNSLLLEAF ESSLLLQTSV
201: FLVAAALTLA FATHVVLNCV FSPPQFKLFA CVRFMAVLVK RFARRDGREQ QFVLVEQKAS IKGSPELRYE MVAGRGIEAI VNRLSKWVVF ILFASIILLR
301: HDGTALWGII GSVSNATLCV VLKRMLNQAR PATTSRTDPG MPSSHAQSIS YISLFAVLSV MEWFGTSKVS MFLSCLIIAS GSYFIRLRVS QKLHTSSQVV
401: VGAIVGSVFC IFWYTMWNSL LLEAFESSIL LQTSVFLVAA ALTLAFAIFV VLNWFRNDR

Best Arabidopsis Sequence Match ( AT3G50920.1 )
(BLAST)

001: MAASSSLLLL LHCPTCNFYF DSSSYLKRSR LSSYSSIISR GSPLFVSSFG SMTVKRFSSR VGSRSNDGNE QFGALEQESF INNSSEIRKD LVTGGGIEAI
101: VNRLSKWVVS VLFGSIILLR HDGAALWAVI GSISNSALSV VLKRILNQER PTTTLRSDPG MPSSHAQSIS FISVFAVLSV MEWLGTNGVS LFLSGLILAL
201: GSYFIRLRVS QKLHTSSQVV VGAIVGSLFC ILWYTMWNSL LREAFEASLL VQISVFLFAA TFALAFAAYV VLNWFKDER

Arabidopsis Description

LPPE1Lipid phosphate phosphatase epsilon 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4J220]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.