Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, golgi, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- plasma membrane 1
- mitochondrion 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra036849.1-P | Field mustard | cytosol, golgi, peroxisome | 100.0 | 100.0 |
| CDX73772 | Canola | mitochondrion, plastid | 49.15 | 45.82 |
| CDY28991 | Canola | cytosol, endoplasmic reticulum, peroxisome | 43.59 | 45.54 |
| CDY28990 | Canola | plasma membrane | 40.6 | 43.38 |
| AT3G50920.1 | Thale cress | plastid | 40.6 | 34.05 |
| CDY45229 | Canola | plastid | 33.33 | 29.32 |
| CDY50985 | Canola | plastid | 34.19 | 28.57 |
| CDY65309 | Canola | plastid | 33.33 | 27.86 |
| VIT_04s0023g02150.t01 | Wine grape | plasma membrane | 26.07 | 27.23 |
| GSMUA_Achr10P... | Banana | cytosol, peroxisome, plasma membrane | 26.07 | 26.87 |
| Solyc02g062570.2.1 | Tomato | golgi, plasma membrane, vacuole | 24.36 | 26.39 |
| CDY52388 | Canola | cytosol, endoplasmic reticulum, golgi | 15.81 | 25.87 |
| CDY34432 | Canola | cytosol, plasma membrane, plastid | 15.81 | 25.87 |
| HORVU6Hr1G068790.1 | Barley | mitochondrion | 28.21 | 24.35 |
| TraesCS6A01G271900.1 | Wheat | mitochondrion | 28.21 | 24.26 |
| TraesCS6D01G252100.1 | Wheat | plastid | 28.21 | 24.18 |
| TraesCS6B01G299500.1 | Wheat | plastid | 27.78 | 23.9 |
| OQU85552 | Sorghum | plastid | 27.78 | 23.72 |
| TraesCS6B01G299400.1 | Wheat | plastid | 26.5 | 23.22 |
| PGSC0003DMT400009288 | Potato | extracellular, plasma membrane, vacuole | 13.25 | 23.13 |
| TraesCS6A01G271800.1 | Wheat | plastid | 26.92 | 23.08 |
| Zm00001d017767_P001 | Maize | plastid | 26.92 | 22.58 |
| Os02t0704500-01 | Rice | plastid | 26.5 | 22.55 |
| KRH28718 | Soybean | plastid | 27.78 | 22.49 |
| PGSC0003DMT400040097 | Potato | plastid | 25.21 | 22.26 |
| Solyc02g062580.2.1 | Tomato | plasma membrane | 25.21 | 22.26 |
| KRH76744 | Soybean | plastid | 26.92 | 22.03 |
| CDX90676 | Canola | golgi, peroxisome, plasma membrane | 43.16 | 22.0 |
| Solyc02g084970.2.1 | Tomato | plasma membrane, plastid | 23.5 | 20.0 |
| Zm00001d051561_P001 | Maize | plastid | 26.07 | 19.43 |
| PGSC0003DMT400009294 | Potato | cytosol, peroxisome, plasma membrane, plastid | 23.5 | 17.8 |
Protein Annotations
| EnsemblPlants:CDX77963 | EnsemblPlantsGene:GSBRNA2T00129226001 | GO:A0A078CS17 | PANTHER:PTHR11247 | PANTHER:PTHR11247:SF25 | ProteinID:CDX77963 |
| ProteinID:CDX77963.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0002542BFC | MapMan:35.2 | : |
Description
BnaA09g31580D
Coordinates
chrLK031814:-:304461..305354
Molecular Weight (calculated)
26787.0 Da
IEP (calculated)
10.605
GRAVY (calculated)
0.244
Length
234 amino acids
Sequence
(BLAST)
(BLAST)
001: MTVLVKRFAS NDLSELWNEL VSRGRIEAIF NRLLSVFLKR LLNQARPATT SRTDPGMPSS HAQSMSFISV FAVLSDKSKL EPRHPLFPLP TVKTDWSMLL
101: LCSYGMAWNQ RSLPVPKHAH PRIGFIFCKC FNYSIRMLLN SFSFLVNQFA LISPSANVQI RLRVSQKLHT SNQVVVGGLM GSVFCIFRYK TWNLLLLEAY
201: ESSLLLQLYV FLVASAYTLA FAAYVVLNWF RHDR
101: LCSYGMAWNQ RSLPVPKHAH PRIGFIFCKC FNYSIRMLLN SFSFLVNQFA LISPSANVQI RLRVSQKLHT SNQVVVGGLM GSVFCIFRYK TWNLLLLEAY
201: ESSLLLQLYV FLVASAYTLA FAAYVVLNWF RHDR
001: MADLVKTNAR RDGEDRFQAL EQEAFISNSS SELQNELVSD AGDGIEAIAN RLSKWIVAAL FGSVLLLRHD GAALWAVIGS VSNSVLSVAL KRILNQERPV
101: ATLRSDPGMP SSHAQSISFI SVFSVFSVME WLGTNVLSLF LSGFILALGS YFTWLRVSQK LHTTSQVVVG AIVGSVYSTL WYVTWNSLVL EAFTSTFSVQ
201: IALFLVAAAS ALGFAVYVLL NWFKDDR
101: ATLRSDPGMP SSHAQSISFI SVFSVFSVME WLGTNVLSLF LSGFILALGS YFTWLRVSQK LHTTSQVVVG AIVGSVYSTL WYVTWNSLVL EAFTSTFSVQ
201: IALFLVAAAS ALGFAVYVLL NWFKDDR
Arabidopsis Description
Phosphatidic acid phosphatase (PAP2) family protein [Source:TAIR;Acc:AT5G66450]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.