Factsheet for HORVU6Hr1G078210.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
TargetP:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G039040.6
HORVU4Hr1G051720.1
HORVU4Hr1G073930.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09420.1	HORVU3Hr1G039040.6	AT3G20000.1	17981999
AT5G09420.1	HORVU4Hr1G051720.1	AT3G20000.1	17981999
AT5G09420.1	HORVU4Hr1G073930.1	AT3G54660.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G349000.1	Wheat	plastid	84.77	77.67
TraesCS6D01G298000.1	Wheat	plastid	84.59	77.5
TraesCS6A01G318800.1	Wheat	plastid	84.41	77.34
KXG30729	Sorghum	plastid	69.89	63.52
Zm00001d018098_P005	Maize	plasma membrane	69.35	63.03
Os02t0754500-01	Rice	cytosol, mitochondrion, plastid	68.64	62.48
KRH58262	Soybean	cytosol	30.47	61.15
VIT_12s0028g00300.t01	Wine grape	cytosol	55.38	50.91
GSMUA_Achr9P14860_001	Banana	mitochondrion	56.27	50.4
KRH10544	Soybean	golgi	52.15	48.66
KRH43896	Soybean	cytosol, endoplasmic reticulum	52.15	48.66
Solyc10g047300.1.1	Tomato	plastid	50.9	47.49
CDY21581	Canola	cytosol	50.9	47.1
AT5G09420.1	Thale cress	cytosol	50.54	46.77
PGSC0003DMT400042984	Potato	extracellular, plasma membrane	23.3	39.04
KRH58264	Soybean	golgi, plasma membrane	21.33	36.73
HORVU4Hr1G006870.1	Barley	plastid	39.07	33.44
Bra009383.1-P	Field mustard	cytosol, plastid	51.61	31.2
HORVU2Hr1G126540.1	Barley	cytosol	17.2	28.24
HORVU6Hr1G060680.1	Barley	cytosol	7.53	26.42
HORVU5Hr1G093800.2	Barley	mitochondrion, plastid	8.6	13.04
HORVU1Hr1G090770.2	Barley	endoplasmic reticulum, golgi, plasma membrane	13.98	12.81
HORVU2Hr1G115000.1	Barley	cytosol, plastid	12.72	12.75
HORVU4Hr1G019600.11	Barley	cytosol	13.08	12.07
HORVU3Hr1G088210.5	Barley	endoplasmic reticulum, golgi	10.93	9.17

Protein Annotations

KEGG:00970+6.3.5.7	Gene3D:1.25.40.10	Gene3D:3.90.1300.10	MapMan:35.1	InterPro:AS_sf	InterPro:Amidase
InterPro:Amidase_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0004040	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006626
GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	EnsemblPlantsGene:HORVU6Hr1G078210
EnsemblPlants:HORVU6Hr1G078210.1	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	InterPro:IPR036928	PFAM:PF01425
PFAM:PF13414	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR11895	PANTHER:PTHR11895:SF92	SMART:SM00028
SUPFAM:SSF48452	SUPFAM:SSF75304	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	SEG:seg

Description

No Description!

Coordinates

chrchr6H:+:533268022..533275319

Molecular Weight (calculated)

58066.2 Da

IEP (calculated)

9.573

GRAVY (calculated)

-0.204

Length

558 amino acids

Sequence
(BLAST)

001: MRTKCGLWKY CPRAARLFRT XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXDVSAGSR GFRRGLDPPL FPRRVFSFDI EGHVAGFGNP DWKRTHKAAS
101: HTAVAVKVLL KQGATCVGRT VMDELGFGVT GENLHCGTPI NPASPSVLPG GSCSGAAVAV SAQLVEFALG WLARDPHILS RVGDALLPVA ACGLKGKRQL
201: VFADDCFELL KIPNQKTVDV IENAVHTLPG GYQPPKHINI GQYISSNVPS LKEFCEPSTK LQEGKSALKA LCTVMLLLQR YEFKSNHEDW VNTVKPKLGL
301: EVSTRVLQAV NFTDDNIKSL YIVRTEWRAA LKNLLKDTGI LVLPTMAGHP LKRNSKQRLS SEFEDKMYAF VSIAALSGCC QATVPLGNHN DHPISISFVA
401: AHGSDKFLLR AILDMYSTIQ EQIVLASKLT LPPVIDRDVD ASELLKEKGN NSFKRKQWSK AIEFYSGAIK LNETNATYYC NRAAAYLELG RFKQAEADCD
501: QALLLDKKNV KAYLRRGTAK ESCMNYQEAL QDFRHALALE PQNKTALAAE RRLQKHLR

Best Arabidopsis Sequence Match ( AT1G08980.1 )
(BLAST)

001: MATNNDFGAF IEKVTISPTS TSSSPPSLQG LTFAIKDIFD VEGRVTGFGN PDWLRTHSAA TSTAPVVSSL LEAGATALGI TIMDEMAYSI NGENAHYGTP
101: RNPIAFDRVP GGSSSGSAVA VAARLVDFSI GTDTGGSVRV PASYCGIFGF RPSHGAVSTV GLTPMAQSFD TVGWFARDTA TLKRVGCVLL QQHHLNPIEP
201: SQLIIADDCF KLCSVPHDLL VQPLVGSVEK SFGGNTVVKK VNLGEYIGQN VPSLKHFMTS DDVTTQQEFC IPSLMALSSS MRLLQRHEFK INHGAWISSV
301: KPEFGPGISE RIEEAIRTSD EKIDHCRSVK SELITALSTL LGEKGVLVIP TVPGPPPHLQ ANVAALESFR SRAFSLLSIA GVSGFCQVSI PLGLHENLPV
401: SVSLVAKYGS DGFLLSLVDS LAAFI

Arabidopsis Description

AMI1Amidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FR37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.