Factsheet for VIT_12s0028g00300.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 2
plastid 2
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0097g00590.t01
VIT_07s0141g00390.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09420.1	VIT_03s0097g00590.t01	AT3G20000.1	17981999
AT5G09420.1	VIT_07s0141g00390.t01	AT3G54660.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58262	Soybean	cytosol	35.42	77.34
Solyc10g047300.1.1	Tomato	plastid	69.85	70.9
KRH43896	Soybean	cytosol, endoplasmic reticulum	69.69	70.74
KRH10544	Soybean	golgi	69.36	70.4
PGSC0003DMT400042984	Potato	extracellular, plasma membrane	37.89	69.07
KRH58264	Soybean	golgi, plasma membrane	35.91	67.28
CDY21581	Canola	cytosol	66.06	66.5
AT5G09420.1	Thale cress	cytosol	65.4	65.84
GSMUA_Achr9P14860_001	Banana	mitochondrion	65.4	63.72
TraesCS6A01G318800.1	Wheat	plastid	60.3	60.1
TraesCS6D01G298000.1	Wheat	plastid	59.97	59.77
TraesCS6B01G349000.1	Wheat	plastid	59.64	59.44
KXG30729	Sorghum	plastid	59.97	59.28
Zm00001d018098_P005	Maize	plasma membrane	58.48	57.82
Os02t0754500-01	Rice	cytosol, mitochondrion, plastid	56.51	55.95
HORVU6Hr1G078210.1	Barley	mitochondrion	50.91	55.38
VIT_17s0000g02400.t01	Wine grape	endoplasmic reticulum	53.54	55.08
VIT_14s0128g00320.t01	Wine grape	cytosol	36.41	51.04
Bra009383.1-P	Field mustard	cytosol, plastid	66.89	43.99
VIT_12s0028g01330.t01	Wine grape	mitochondrion	17.3	19.23
VIT_07s0031g02700.t01	Wine grape	golgi	17.46	17.38
VIT_15s0024g00980.t01	Wine grape	cytosol	15.32	17.06
VIT_03s0097g00620.t01	Wine grape	cytosol, nucleus, plasma membrane	16.97	16.97
VIT_00s0283g00010.t01	Wine grape	mitochondrion	4.28	15.12
VIT_15s0024g01020.t01	Wine grape	cytosol	13.51	14.44
VIT_15s0024g01010.t01	Wine grape	endoplasmic reticulum, golgi	14.66	14.24

Protein Annotations

KEGG:00970+6.3.5.7	Gene3D:1.25.40.10	EntrezGene:100268105	wikigene:100268105	MapMan:23.2.1.7	Gene3D:3.90.1300.10
EMBL:AM448209	InterPro:AS_sf	InterPro:Amidase	InterPro:Amidase_dom	ProteinID:CAN72047	ProteinID:CAN72047.1
ProteinID:CBI32979	ProteinID:CBI32979.3	UniProt:D7TR56	EMBL:FN596011	GO:GO:0003674	GO:GO:0003824
GO:GO:0004040	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006626	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016787	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	InterPro:IPR036928	EntrezGene:LOC100268105	wikigene:LOC100268105	PFAM:PF01425	PFAM:PF13414
PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR11895	PANTHER:PTHR11895:SF92	SMART:SM00028	SUPFAM:SSF48452
SUPFAM:SSF75304	TIGR:TC57963	TMHMM:TMhelix	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat
UniParc:UPI00015CCB66	ArrayExpress:VIT_12s0028g00300	EnsemblPlantsGene:VIT_12s0028g00300	EnsemblPlants:VIT_12s0028g00300.t01	unigene:Vvi.17899	unigene:Vvi.7668
RefSeq:XP_002268888	RefSeq:XP_002268888.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr12_random:-:909301..960494

Molecular Weight (calculated)

66429.4 Da

IEP (calculated)

9.743

GRAVY (calculated)

-0.084

Length

607 amino acids

Sequence
(BLAST)

001: MSKALHQLKK HIDVSNPKAW IVIAAGVAGI VILVETRRRK RRAALLTREG LGAFVERFEL LPFPQPPPPA SRLLLSGFKF AVTDIFDVKG YVTGFGSTSW
101: KRTHEEATKT AVAVTALLKN GATCVGKTVL DELSFGITGE NMDFGSPANP VLPSHIPGGS SSGSAVAVAS QLVDFAIGTD TIGGVRVPAS FCGILGYRPS
201: HGAVSTIGVL PSSQSLDTVG WFARDPSILH RVGHILLQIN PVEPRRVRNL MIADDLFQLS KVPKQKTVHV VNKVAENLSG YQPPKHVNFG QYIASNVPSL
301: KGFHEQSINV KNGISALKAL SSVMISLQRC EFKTNHEEWV KSVKPRLGPE VSDRVLAAIN TTHENIKIFY KVRTEMRAAL HSLLKDDGIL VIPTVADPPL
401: KLNSKKAVFS EFHDRAFTLL SIASMSGCCQ VTVPLGKHED FPISVSFIAF HGADKFLLDT VLDMYPSLQE QASITSNSLP LPDTNGDMDA SELLKEKGNA
501: AFKGRQWNKA VNYYTEAIKL NETNATYYCN RAAAYLELGC FQQAVEDCSK AILLDKKNVK AYLRRGTARE SLLCYKEAAQ DFKHALVLEP QNKVANLAEK
601: RLRKLMS

Best Arabidopsis Sequence Match ( AT5G09420.1 )
(BLAST)

001: MSNTLSLIQS NASNPKVWVV IGVTVAGIVI LAETRKRRIR ALREEDFGAF LDRFELLPFP PPPPPAAKQS LSGLTFSISD AFDVKDYITG FGCPQWKKTH
101: EAAEKTAVVV TTLLKNGATC VGKTIMDELG FGIIGENKHY GTPINPLMPD NVPGGCSSGS AVSVGAELVD FSLGIDTTGG VRVPAAFCGI LGFRPSQGTV
201: SSVGVLPNSQ SLETVGWFAS DPSVLCQVGH ALLNLSAVTH RRQRSLIFAD DLFELSDIPK QKSVQVVRKA IENLSGYKTP KHVNVGQYVA SNVPSLAEFC
301: EQSGKSQNSA STLRALSSVM LAIQRHEFKT NHEEWWQTCK SFLGPRFSND VVTALKSKNE SIKSLYRVKN EMRATIQSLL KEDGILVIPT VADPPPRLNT
401: KRNKSLNEFL DRTYALSCIA SMSGCCQVTI PLGEHGDRPI SVSLLTYYGG DKFLLDTTLD VYASLQDQAK LASNLAPVSD TNGNMEASEV MKEKGNAAYK
501: GKQWNKAVNF YTEAIKLNGA NATYYCNRAA AFLELCCFQQ AEQDCTKAML IDKKNVKAYL RRGTARESLV RYKEAAADFR HALVLEPQNK TAKVAEKRLR
601: KHI

Arabidopsis Description

OM64Outer envelope protein 64, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4KCL7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.