CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10544
KRH43896
KRH58262
KRH58264

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54660.1	KRH10544	AT5G09420.1	17981999
AT3G54660.1	KRH43896	AT5G09420.1	17981999
AT3G54660.1	KRH58262	AT5G09420.1	17981999
AT3G54660.1	KRH58264	AT5G09420.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH71329	Soybean	plastid	97.43	97.43
Solyc09g065900.2.1	Tomato	plastid	80.37	78.64
PGSC0003DMT400019491	Potato	cytosol, extracellular, plastid	80.18	78.6
VIT_07s0141g00390.t01	Wine grape	plastid	79.82	77.82
KRH71332	Soybean	cytosol	17.43	76.61
Bra007087.1-P	Field mustard	plastid	77.61	75.13
CDY69892	Canola	plastid	77.43	75.09
CDX73461	Canola	plastid	77.06	74.87
AT3G54660.1	Thale cress	plastid	77.06	74.34
GSMUA_Achr3P29340_001	Banana	plastid	74.31	72.45
Zm00001d027769_P001	Maize	plastid	72.29	71.64
EER95455	Sorghum	plastid	71.74	71.09
TraesCS4B01G278900.1	Wheat	plastid	70.83	70.18
TraesCS4A01G025200.1	Wheat	golgi	70.46	69.82
TraesCS4D01G277400.1	Wheat	golgi	70.64	69.75
Os03t0163300-01	Rice	plastid	71.01	69.73
CDY13217	Canola	plastid	74.31	67.28
CDX94793	Canola	endoplasmic reticulum	20.37	66.47
CDX76141	Canola	plastid	73.03	65.79
Bra014801.1-P	Field mustard	plastid	73.76	65.37
Os10t0415300-02	Rice	plastid	65.69	64.62
HORVU4Hr1G073930.1	Barley	mitochondrion, plastid	69.72	64.41
OQU91783	Sorghum	plastid	61.83	63.47
GSMUA_Achr9P21540_001	Banana	cytosol	15.6	53.12
KRH08536	Soybean	cytosol	48.26	52.49
KRH70193	Soybean	cytosol, nucleus	47.89	52.1
KRH11978	Soybean	endoplasmic reticulum, nucleus	28.62	27.61
KRH02332	Soybean	endoplasmic reticulum, nucleus	28.26	27.02
KRH50629	Soybean	mitochondrion	23.49	25.6
KRH02419	Soybean	mitochondrion	23.49	25.6
KRH50756	Soybean	endoplasmic reticulum, nucleus	27.89	24.17
KRH37006	Soybean	cytosol	13.76	22.12

Protein Annotations

KEGG:00480+1.8.1.7	MapMan:10.4.1.4	EntrezGene:100810005	Gene3D:3.30.390.30	Gene3D:3.50.50.60	EMBL:ACUP02006095
InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	InterPro:FAD/NAD-linked_Rdtase_dimer_sf	EnsemblPlantsGene:GLYMA_10G032100	GO:GO:0000166	GO:GO:0000305
GO:GO:0003674	GO:GO:0003824	GO:GO:0004362	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006091	GO:GO:0006749	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987
GO:GO:0016491	GO:GO:0016668	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0050660
GO:GO:0050661	GO:GO:0055114	GO:GO:0098869	InterPro:Glut-diS_reduct	UniProt:I1L899	InterPro:IPR016156
InterPro:IPR036188	EnsemblPlants:KRH32102	ProteinID:KRH32102	ProteinID:KRH32102.1	ProteinID:KRH32103.1	PFAM:PF02852
PFAM:PF07992	PIRSF:PIRSF000350	PRINTS:PR00368	PRINTS:PR00411	ScanProsite:PS00076	PANTHER:PTHR43256
PANTHER:PTHR43256:SF4	MetaCyc:PWY-4081	InterPro:Pyr_OxRdtase_I_AS	InterPro:Pyr_nuc-diS_OxRdtase	InterPro:Pyr_nucl-diS_OxRdtase_dimer	SUPFAM:SSF51905
SUPFAM:SSF55424	TIGRFAMs:TIGR01424	UniParc:UPI000233C219	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:-:2807234..2812723

Molecular Weight (calculated)

58557.9 Da

IEP (calculated)

7.343

GRAVY (calculated)

-0.098

Length

545 amino acids

Sequence
(BLAST)

001: MATSLSVSPS LSLNTLFFAK ALPLSRPSLL SLPLPKSLLS LSTRRRTFAV RAESQNGADA VPAHYDFDLF TIGAGSGGVR AARFAANYGA SVAICELPFS
101: TISSETTGGV GGTCVIRGCV PKKLLVYASK FSHEFEESNG FGWRYDSEPK HDWSSLIANK NAELQRLTGI YKNILNNAGV KLIEGHGKII DPHTVDVNGK
201: LYSAKHILVT VGGRPFIPDI PGNEYAIDSD AALDLPTKPE KIAIVGGGYI ALEFAGIFNG LKSEVHVFIR QKKVLRGFDE EIRDFVSEQM SVRGIEFHTE
301: ESPQAITKSA DGSFSLKTNK GTVDGFSHIM FATGRRPNTQ NLGLESVGVK IAKDGAIEVD EYSQTSVPSI WAVGDVTNRI NLTPVALMEG GALVKTLFQD
401: NPTKPDYRAV PSAVFSQPPI GQVGLTEEQA VQQYGDIDIF TANFRPLKAT LSGLPDRVFM KLVVCAKTNE VLGLHMCGDD APEIVQGFAV ALKARLTKAD
501: FDATVGIHPS AAEEFVTMRT PTRKIRKSES SEGKSGSEAK TAAGV

Best Arabidopsis Sequence Match ( AT3G54660.1 )
(BLAST)

001: MASTPKLTST ISSSSPSLQF LCKKLPIAIH LPSSSSSSFL SLPKTLTSLY SLRPRIALLS NHRYYHSRRF SVCASTDNGA ESDRHYDFDL FTIGAGSGGV
101: RASRFATSFG ASAAVCELPF STISSDTAGG VGGTCVLRGC VPKKLLVYAS KYSHEFEDSH GFGWKYETEP SHDWTTLIAN KNAELQRLTG IYKNILSKAN
201: VKLIEGRGKV IDPHTVDVDG KIYTTRNILI AVGGRPFIPD IPGKEFAIDS DAALDLPSKP KKIAIVGGGY IALEFAGIFN GLNCEVHVFI RQKKVLRGFD
301: EDVRDFVGEQ MSLRGIEFHT EESPEAIIKA GDGSFSLKTS KGTVEGFSHV MFATGRKPNT KNLGLENVGV KMAKNGAIEV DEYSQTSVPS IWAVGDVTDR
401: INLTPVALME GGALAKTLFQ NEPTKPDYRA VPCAVFSQPP IGTVGLTEEQ AIEQYGDVDV YTSNFRPLKA TLSGLPDRVF MKLIVCANTN KVLGVHMCGE
501: DSPEIIQGFG VAVKAGLTKA DFDATVGVHP TAAEEFVTMR APTRKFRKDS SEGKASPEAK TAAGV

Arabidopsis Description

EMB2360At3g54660 [Source:UniProtKB/TrEMBL;Acc:Q5FV38]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.