CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY21581

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54660.1	CDY21581	AT5G09420.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014801.1-P	Field mustard	plastid	95.21	93.66
CDY13217	Canola	plastid	86.61	87.04
CDX73461	Canola	plastid	79.17	85.38
CDY69892	Canola	plastid	79.01	85.05
AT3G54660.1	Thale cress	plastid	77.52	83.01
CDX93023	Canola	cytosol, mitochondrion	8.93	79.41
CDX94793	Canola	endoplasmic reticulum	20.99	76.05
VIT_07s0141g00390.t01	Wine grape	plastid	67.77	73.35
KRH71329	Soybean	plastid	65.95	73.21
Solyc09g065900.2.1	Tomato	plastid	67.27	73.07
KRH32102	Soybean	plastid	65.79	73.03
PGSC0003DMT400019491	Potato	cytosol, extracellular, plastid	67.11	73.02
TraesCS4B01G278900.1	Wheat	plastid	63.8	70.18
TraesCS4D01G277400.1	Wheat	golgi	63.8	69.93
TraesCS4A01G025200.1	Wheat	golgi	63.47	69.82
Os03t0163300-01	Rice	plastid	63.8	69.55
GSMUA_Achr3P29340_001	Banana	plastid	64.13	69.41
EER95455	Sorghum	plastid	62.15	68.36
Zm00001d027769_P001	Maize	plastid	62.15	68.36
Os10t0415300-02	Rice	plastid	59.34	64.8
HORVU4Hr1G073930.1	Barley	mitochondrion, plastid	62.98	64.58
KRH71332	Soybean	cytosol	12.89	62.9
OQU91783	Sorghum	plastid	54.88	62.52
GSMUA_Achr9P21540_001	Banana	cytosol	14.71	55.62
CDX85155	Canola	cytosol	40.5	50.62
CDX77463	Canola	cytosol	40.5	50.41
CDX92998	Canola	cytosol	39.83	49.79
CDX94838	Canola	cytosol	41.49	47.45
CDX90541	Canola	extracellular, nucleus, peroxisome	10.08	29.33
CDY34436	Canola	plastid	24.46	27.01
CDY32221	Canola	plastid	24.13	26.59
CDX92121	Canola	mitochondrion	20.99	25.2
CDX93639	Canola	mitochondrion	20.99	25.05
CDY20935	Canola	mitochondrion	20.99	25.05
CDX95864	Canola	mitochondrion	20.83	24.9
CDX75895	Canola	plastid	24.96	24.47
CDX82387	Canola	plastid	24.96	24.43
CDY09711	Canola	plasma membrane	11.4	18.21

Protein Annotations

KEGG:00480+1.8.1.7	MapMan:10.4.1.4	Gene3D:3.30.390.30	Gene3D:3.50.50.60	GO:A0A078CG40	EnsemblPlants:CDX76141
ProteinID:CDX76141	ProteinID:CDX76141.1	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	InterPro:FAD/NAD-linked_Rdtase_dimer_sf	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004362	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623
GO:GO:0006749	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0016491
GO:GO:0016668	GO:GO:0019725	GO:GO:0045454	GO:GO:0050660	GO:GO:0050661	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00126430001	InterPro:Glut-diS_reduct	InterPro:IPR016156	InterPro:IPR036188	PFAM:PF02852	PFAM:PF07992
PIRSF:PIRSF000350	PRINTS:PR00368	PRINTS:PR00411	ScanProsite:PS00076	PANTHER:PTHR43256	PANTHER:PTHR43256:SF4
MetaCyc:PWY-4081	InterPro:Pyr_OxRdtase_I_AS	InterPro:Pyr_nuc-diS_OxRdtase	InterPro:Pyr_nucl-diS_OxRdtase_dimer	SUPFAM:SSF51905	SUPFAM:SSF55424
TIGRFAMs:TIGR01424	UniParc:UPI0004EE9E7A	:	:	:	:

Description

BnaA04g04050D

Coordinates

chrLK031806:+:1269994..1274026

Molecular Weight (calculated)

66754.5 Da

IEP (calculated)

8.976

GRAVY (calculated)

-0.313

Length

605 amino acids

Sequence
(BLAST)

001: MLFSNHNTKL HNKKNSQSQS IYHHRLTLLS NHRYNPSRRF SLRSQNDNVA DSDLRYDFDL FTVGAGSGGV RASRFATSFG ASAAVCELPF STISSDTAGG
101: VGGTCVLRGC VPKKLLVYAS KYTHEFEDSH GFGWKYDTDP SHDWTTLIAN KNAELQRLTG IYKNILNNAN VKLIEGRGKV IDPHTVDVDG RIYTTRNILI
201: AVGGRPFIPD IPGREFAIDS DAALDLPSKP KKIAIVGGGY IALEFAGIFN GLSSEVHVFI RQKKVLRGFD EDVRDFVGEQ MSLRGIEFHT EESPEAIIKS
301: GDGSFSLKTS KGTVDGFSHV MFATGRKPNT KNLGLENVGV KLAKNGAIEV DEYSRTSVPS IWAVGDVTDR INLTPVALME GGALAKTLFQ NEPTKPDHRA
401: VPCAVFSQPP IGTVGLTEEQ AIEQYGDIDV FTSNFKPLKA TLSGLPDRVF MKLIVCANTD KVLGVHMCGE DSPEIIQGFG VAVKAGLTKA DFDATVGVHP
501: TAAEEFVTMR TPTRKIRKGS SEMGVPYFIS GERQVLRLKQ LQGSREGCKI RLDLHHWSFL TRRTISIKSQ RFYQWRCHKA HNHGAKLFDR VTYSTCRPDS
601: QESLY

Best Arabidopsis Sequence Match ( AT3G54660.1 )
(BLAST)

001: MASTPKLTST ISSSSPSLQF LCKKLPIAIH LPSSSSSSFL SLPKTLTSLY SLRPRIALLS NHRYYHSRRF SVCASTDNGA ESDRHYDFDL FTIGAGSGGV
101: RASRFATSFG ASAAVCELPF STISSDTAGG VGGTCVLRGC VPKKLLVYAS KYSHEFEDSH GFGWKYETEP SHDWTTLIAN KNAELQRLTG IYKNILSKAN
201: VKLIEGRGKV IDPHTVDVDG KIYTTRNILI AVGGRPFIPD IPGKEFAIDS DAALDLPSKP KKIAIVGGGY IALEFAGIFN GLNCEVHVFI RQKKVLRGFD
301: EDVRDFVGEQ MSLRGIEFHT EESPEAIIKA GDGSFSLKTS KGTVEGFSHV MFATGRKPNT KNLGLENVGV KMAKNGAIEV DEYSQTSVPS IWAVGDVTDR
401: INLTPVALME GGALAKTLFQ NEPTKPDYRA VPCAVFSQPP IGTVGLTEEQ AIEQYGDVDV YTSNFRPLKA TLSGLPDRVF MKLIVCANTN KVLGVHMCGE
501: DSPEIIQGFG VAVKAGLTKA DFDATVGVHP TAAEEFVTMR APTRKFRKDS SEGKASPEAK TAAGV

Arabidopsis Description

EMB2360At3g54660 [Source:UniProtKB/TrEMBL;Acc:Q5FV38]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.