Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, extracellular, nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- peroxisome 1
- mitochondrion 1
- nucleus 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012738.1-P | Field mustard | peroxisome | 99.04 | 99.04 |
| Os05t0156700-01 | Rice | plastid | 33.65 | 30.04 |
| CDY34436 | Canola | plastid | 70.67 | 26.82 |
| CDY32221 | Canola | plastid | 69.71 | 26.41 |
| AT4G16155.1 | Thale cress | plastid | 69.23 | 25.4 |
| VIT_05s0077g01210.t01 | Wine grape | plastid | 66.35 | 24.17 |
| KRH02332 | Soybean | endoplasmic reticulum, nucleus | 65.87 | 24.04 |
| KRH11978 | Soybean | endoplasmic reticulum, nucleus | 63.94 | 23.54 |
| CDX75895 | Canola | plastid | 68.75 | 23.18 |
| PGSC0003DMT400007182 | Potato | extracellular | 63.46 | 23.16 |
| Solyc01g100360.2.1 | Tomato | plastid | 63.46 | 23.16 |
| VIT_14s0060g01410.t01 | Wine grape | cytosol | 26.92 | 23.14 |
| CDX82387 | Canola | plastid | 68.75 | 23.14 |
| KRH37006 | Soybean | cytosol | 37.5 | 23.01 |
| PGSC0003DMT400069799 | Potato | mitochondrion, plastid | 62.02 | 22.63 |
| EES19070 | Sorghum | plastid | 61.06 | 22.6 |
| Solyc05g053100.2.1 | Tomato | nucleus | 62.02 | 22.59 |
| Os01t0337900-01 | Rice | plastid | 60.58 | 22.46 |
| VIT_14s0060g01330.t01 | Wine grape | plastid | 63.46 | 22.45 |
| KXG32441 | Sorghum | plastid | 60.1 | 22.28 |
| KRH50756 | Soybean | endoplasmic reticulum, nucleus | 66.83 | 22.1 |
| GSMUA_Achr3P12660_001 | Banana | plastid | 60.1 | 22.05 |
| TraesCS1A01G099500.2 | Wheat | plastid | 60.1 | 22.01 |
| Zm00001d009779_P002 | Maize | plastid | 61.06 | 21.71 |
| CDY09711 | Canola | plasma membrane | 39.42 | 21.64 |
| HORVU1Hr1G023060.8 | Barley | plastid | 60.58 | 21.61 |
| TraesCS1B01G124900.1 | Wheat | plastid | 61.06 | 21.56 |
| CDX94793 | Canola | endoplasmic reticulum | 17.31 | 21.56 |
| TraesCS1D01G107400.1 | Wheat | plastid | 60.58 | 21.39 |
| PGSC0003DMT400069988 | Potato | cytosol | 16.83 | 20.71 |
| Zm00001d009212_P004 | Maize | extracellular | 60.1 | 20.36 |
| GSMUA_Achr1P18490_001 | Banana | plastid | 23.56 | 17.25 |
| CDX93639 | Canola | mitochondrion | 31.25 | 12.82 |
| CDX95864 | Canola | mitochondrion | 30.77 | 12.65 |
| CDY20935 | Canola | mitochondrion | 30.77 | 12.62 |
| CDX92121 | Canola | mitochondrion | 30.29 | 12.5 |
| CDX85155 | Canola | cytosol | 25.96 | 11.16 |
| CDX77463 | Canola | cytosol | 25.96 | 11.11 |
| CDX73461 | Canola | plastid | 29.81 | 11.05 |
| CDY69892 | Canola | plastid | 29.81 | 11.03 |
| CDX92998 | Canola | cytosol | 25.48 | 10.95 |
| CDX94838 | Canola | cytosol | 25.96 | 10.21 |
| CDY13217 | Canola | plastid | 29.33 | 10.13 |
| CDX76141 | Canola | plastid | 29.33 | 10.08 |
| CDX93023 | Canola | cytosol, mitochondrion | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX90541 | EnsemblPlantsGene:GSBRNA2T00151168001 | Gene3D:3.50.50.60 | GO:A0A078DMU1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016491 | GO:GO:0055114 | InterPro:FAD/NAD-bd_sf | InterPro:FAD/NAD-binding_dom |
| InterPro:IPR036188 | PANTHER:PTHR22912 | PANTHER:PTHR22912:SF196 | PFAM:PF07992 | PRINTS:PR00368 | ProteinID:CDX90541 |
| ProteinID:CDX90541.1 | SUPFAM:SSF51905 | UniParc:UPI0004EF242B | MapMan:35.1 | : | : |
Description
BnaA03g42400D
Coordinates
chrLK031863:+:749156..750522
Molecular Weight (calculated)
22614.8 Da
IEP (calculated)
8.076
GRAVY (calculated)
0.130
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: MKALGVDILI GFGSSLGPQK VKYGKDNIIT AKDIIIATGS VPFERLSSQV THALKLGSVP DRIAIIGSGY IGLQFSECLH GSWKRQQSQN LSKCQHQVPL
101: IVILSTFDAK TKEPKDTLEV DAALIATGRA PFTNGLGLEN INVATQIGFI PVDERMRVID ENGKLVPHLY CVGDANGLMR LVPKEFLEFI SLDSMQLILS
201: MKLPTPSL
101: IVILSTFDAK TKEPKDTLEV DAALIATGRA PFTNGLGLEN INVATQIGFI PVDERMRVID ENGKLVPHLY CVGDANGLMR LVPKEFLEFI SLDSMQLILS
201: MKLPTPSL
001: MQSAMALSFS QTSFTRPNHV LGSSGSVFST PRSLRFCGLR REAFGFSTSN QLAIRSNRIQ FLSRKSFQVS ASASSNGNGA PPKSFDYDLI IIGAGVGGHG
101: AALHAVEKGL KTAIIEGDVV GGTCVNRGCV PSKALLAVSG RMRELQNEHH MKSFGLQVSA AGYDRQGVAD HANNLATKIR NNLTNSMKAI GVDILTGFGS
201: VLGPQKVKYG KDNIITAKDI IIATGSVPFV PKGIEVDGKT VITSDHALKL ESVPEWIAIV GSGYIGLEFS DVYTALGSEV TFIEALDQLM PGFDPEISKL
301: AQRVLINPRK IDYHTGVFAS KITPARDGKP VLIELIDAKT KEPKDTLEVD AALIATGRAP FTNGLGLENV NVVTQRGFIP VDERMRVIDG KGTLVPNLYC
401: IGDANGKLML AHAASAQGIS VVEQVSGRDH VLNHLSIPAA CFTHPEISMV GLTEPQAKEK GEKEGFKVSV VKTSFKANTK ALAENEGEGI AKMIYRPDNG
501: EILGVHIFGL HAADLIHEAS NAIALGTRIQ DIKLAVHAHP TLSEVLDELF KAAKVESHAT TRTVSEKVVV
101: AALHAVEKGL KTAIIEGDVV GGTCVNRGCV PSKALLAVSG RMRELQNEHH MKSFGLQVSA AGYDRQGVAD HANNLATKIR NNLTNSMKAI GVDILTGFGS
201: VLGPQKVKYG KDNIITAKDI IIATGSVPFV PKGIEVDGKT VITSDHALKL ESVPEWIAIV GSGYIGLEFS DVYTALGSEV TFIEALDQLM PGFDPEISKL
301: AQRVLINPRK IDYHTGVFAS KITPARDGKP VLIELIDAKT KEPKDTLEVD AALIATGRAP FTNGLGLENV NVVTQRGFIP VDERMRVIDG KGTLVPNLYC
401: IGDANGKLML AHAASAQGIS VVEQVSGRDH VLNHLSIPAA CFTHPEISMV GLTEPQAKEK GEKEGFKVSV VKTSFKANTK ALAENEGEGI AKMIYRPDNG
501: EILGVHIFGL HAADLIHEAS NAIALGTRIQ DIKLAVHAHP TLSEVLDELF KAAKVESHAT TRTVSEKVVV
Arabidopsis Description
LPD1Dihydrolipoyl dehydrogenase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:A8MS68]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.