CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001645.1-P	Field mustard	plastid	98.06	97.9
CDX82387	Canola	plastid	97.89	97.73
CDY34436	Canola	plastid	81.2	91.42
CDY32221	Canola	plastid	80.71	90.71
AT3G16950.2	Thale cress	plastid	90.28	89.41
Os05t0156700-01	Rice	plastid	32.25	85.41
PGSC0003DMT400069988	Potato	cytosol	22.85	83.43
VIT_05s0077g01210.t01	Wine grape	plastid	76.5	82.66
KRH02332	Soybean	endoplasmic reticulum, nucleus	75.69	81.93
KRH11978	Soybean	endoplasmic reticulum, nucleus	74.88	81.77
Solyc01g100360.2.1	Tomato	plastid	74.88	81.05
PGSC0003DMT400007182	Potato	extracellular	74.88	81.05
Os01t0337900-01	Rice	plastid	72.93	80.21
EES19070	Sorghum	plastid	72.61	79.72
KXG32441	Sorghum	plastid	71.64	78.79
TraesCS1A01G099500.2	Wheat	plastid	71.64	77.82
PGSC0003DMT400069799	Potato	mitochondrion, plastid	71.15	77.02
KRH37006	Soybean	cytosol	42.3	76.99
Solyc05g053100.2.1	Tomato	nucleus	70.99	76.71
Zm00001d009779_P002	Maize	plastid	72.29	76.24
KRH50756	Soybean	endoplasmic reticulum, nucleus	77.47	75.99
VIT_14s0060g01330.t01	Wine grape	plastid	72.12	75.68
TraesCS1B01G124900.1	Wheat	plastid	72.12	75.55
GSMUA_Achr3P12660_001	Banana	plastid	69.37	75.48
HORVU1Hr1G023060.8	Barley	plastid	71.31	75.47
TraesCS1D01G107400.1	Wheat	plastid	71.96	75.38
VIT_14s0060g01410.t01	Wine grape	cytosol	28.69	73.14
Zm00001d009212_P004	Maize	extracellular	71.47	71.82
CDX90541	Canola	extracellular, nucleus, peroxisome	23.18	68.75
CDY09711	Canola	plasma membrane	41.49	67.55
GSMUA_Achr1P18490_001	Banana	plastid	29.17	63.38
CDX95864	Canola	mitochondrion	27.88	33.99
CDX93639	Canola	mitochondrion	27.88	33.92
CDX92121	Canola	mitochondrion	27.55	33.73
CDY20935	Canola	mitochondrion	27.71	33.73
CDX94793	Canola	endoplasmic reticulum	8.43	31.14
CDY69892	Canola	plastid	25.28	27.76
CDX73461	Canola	plastid	25.12	27.63
CDX77463	Canola	cytosol	20.75	26.34
CDX85155	Canola	cytosol	20.58	26.24
CDX92998	Canola	cytosol	20.26	25.83
CDY13217	Canola	plastid	24.8	25.42
CDX76141	Canola	plastid	24.47	24.96
CDX94838	Canola	cytosol	20.75	24.2
CDX93023	Canola	cytosol, mitochondrion	2.27	20.59

Protein Annotations

KEGG:00010+1.8.1.4	KEGG:00020+1.8.1.4	KEGG:00260+1.8.1.4	KEGG:00280+1.8.1.4	KEGG:00620+1.8.1.4	KEGG:00640+1.8.1.4
Gene3D:3.30.390.30	Gene3D:3.50.50.60	MapMan:5.1.2.2.3	GO:A0A078CGA8	EnsemblPlants:CDX75895	ProteinID:CDX75895
ProteinID:CDX75895.1	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	InterPro:FAD/NAD-linked_Rdtase_dimer_sf	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004148	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016668	GO:GO:0019725	GO:GO:0045454
GO:GO:0050660	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00123897001	InterPro:IPR016156	InterPro:IPR036188	InterPro:Lipoamide_DH
PFAM:PF02852	PFAM:PF07992	PRINTS:PR00368	PRINTS:PR00411	ScanProsite:PS00076	PANTHER:PTHR22912
PANTHER:PTHR22912:SF196	MetaCyc:PWY-5046	MetaCyc:PWY-5084	InterPro:Pyr_OxRdtase_I_AS	InterPro:Pyr_nucl-diS_OxRdtase_dimer	SUPFAM:SSF51905
SUPFAM:SSF55424	TIGRFAMs:TIGR01350	UniParc:UPI0004EE6C8F	SEG:seg	:	:

Description

BnaC03g39780D

Coordinates

chrLK031805:-:1674873..1678444

Molecular Weight (calculated)

66158.7 Da

IEP (calculated)

8.175

GRAVY (calculated)

-0.069

Length

617 amino acids

Sequence
(BLAST)

001: MQSAIALPFS QTSLTRSNRV LGSTGSIFST PRSLQFCGLR REAFCSSPSN HLTLRSDRVR IRSTRFQVSA AATTNGAPPK SFDYDLIIIG AGVGGHGAAL
101: HAVEKGLKTA IIEGDVVGGT CVNRGCVPSK ALLAVSGRMR ELQNEHHMKS FGLQVSAAGY DRQGVADHAN NLATKIRNNL TNSMKALGVD ILTGFGSVLG
201: PQKVKYGKDN IITAKNIIIA TGSVPFVPKG IEVDGKTVIT SDHALKLESV PDWIAIVGSG YIGLEFSDVY TALGSEVTFI EALDQLMPGF DPEISKLAQR
301: VLINPRKIDY HTGVFASKIT PAKDGKPVMI ELIDAKTKEH KDTLEVDAAL IATGRAPFTN GLGLENVNVV TQRGFIPVDE RMRVIDGNGK LVPNLYCIGD
401: ANGKLMLAHA ASAQGISVVE QVTGRDHVLN HLSIPAACFT HPEISMVGLT EPQAREKGEK EGFKVSVAKT SFKANTKALA ENEGEGIAKM IYRPDNGEIL
501: GVHIFGLHAA DLIHEASNAI ALGTRIQDIK LAVHAHPTLS EVLDELFKAA KVEGHATTKT GDAKIKLNMN EDDPRGPSDN EKQPSLSKDL IVRSTSMSSF
601: VEDIYARVMF LVSRVFV

Best Arabidopsis Sequence Match ( AT3G16950.2 )
(BLAST)

001: MQSAMALSFS QTSFTRPNHV LGSSGSVFST PRSLRFCGLR REAFGFSTSN QLAIRSNRIQ FLSRKSFQVS ASASSNGNGA PPKSFDYDLI IIGAGVGGHG
101: AALHAVEKGL KTAIIEGDVV GGTCVNRGCV PSKALLAVSG RMRELQNEHH MKSFGLQVSA AGYDRQGVAD HANNLATKIR NNLTNSMKAI GVDILTGFGS
201: VLGPQKVKYG KDNIITAKDI IIATGSVPFV PKGIEVDGKT VITSDHALKL ESVPEWIAIV GSGYIGLEFS DVYTALGSEV TFIEALDQLM PGFDPEISKL
301: AQRVLINPRK IDYHTGVFAS KITPARDGKP VLIELIDAKT KEPKDTLEVD AALIATGRAP FTNGLGLENV NVVTQRGFIP VDERMRVIDG KGTLVPNLYC
401: IGDANGKLML AHAASAQGIS VVEQVSGRDH VLNHLSIPAA CFTHPEISMV GLTEPQAKEK GEKEGFKVSV VKTSFKANTK ALAENEGEGI AKMIYRPDNG
501: EILGVHIFGL HAADLIHEAS NAIALGTRIQ DIKLAVHAHP TLSEVLDELF KAAKVESHAT TRTGDAKIKL NTNQEDRKGR RRGGDDEKQP SVSKDLKDIS
601: TRPSSFFENI SVGVLSLLSL IFV

Arabidopsis Description

LPD1Dihydrolipoyl dehydrogenase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:A8MS68]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.