Factsheet for Bra001645.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82387	Canola	plastid	99.51	99.51
CDX75895	Canola	plastid	97.9	98.06
Bra033540.1-P	Field mustard	plastid	82.04	90.05
AT3G16950.2	Thale cress	plastid	89.48	88.76
Os05t0156700-01	Rice	plastid	32.2	85.41
PGSC0003DMT400069988	Potato	cytosol	22.82	83.43
VIT_05s0077g01210.t01	Wine grape	plastid	76.38	82.66
KRH02332	Soybean	endoplasmic reticulum, nucleus	75.4	81.75
KRH11978	Soybean	endoplasmic reticulum, nucleus	74.43	81.42
Solyc01g100360.2.1	Tomato	plastid	74.92	81.23
PGSC0003DMT400007182	Potato	extracellular	74.92	81.23
Os01t0337900-01	Rice	plastid	72.65	80.04
EES19070	Sorghum	plastid	72.33	79.54
KXG32441	Sorghum	plastid	71.68	78.97
TraesCS1A01G099500.2	Wheat	plastid	71.36	77.64
PGSC0003DMT400069799	Potato	mitochondrion, plastid	71.04	77.02
KRH37006	Soybean	cytosol	42.23	76.99
Solyc05g053100.2.1	Tomato	nucleus	70.87	76.71
Zm00001d009779_P002	Maize	plastid	72.01	76.07
KRH50756	Soybean	endoplasmic reticulum, nucleus	77.35	75.99
VIT_14s0060g01330.t01	Wine grape	plastid	72.01	75.68
TraesCS1B01G124900.1	Wheat	plastid	71.84	75.38
GSMUA_Achr3P12660_001	Banana	plastid	69.09	75.31
HORVU1Hr1G023060.8	Barley	plastid	71.04	75.3
TraesCS1D01G107400.1	Wheat	plastid	71.68	75.21
VIT_14s0060g01410.t01	Wine grape	cytosol	28.64	73.14
Zm00001d009212_P004	Maize	extracellular	71.2	71.66
Bra012738.1-P	Field mustard	peroxisome	23.46	69.71
GSMUA_Achr1P18490_001	Banana	plastid	29.45	64.08
Bra018700.1-P	Field mustard	mitochondrion	27.83	33.92
Bra022204.1-P	Field mustard	mitochondrion	27.51	33.73
Bra007087.1-P	Field mustard	plastid	24.92	27.35
Bra015006.1-P	Field mustard	cytosol	20.71	26.34
Bra001931.1-P	Field mustard	cytosol	20.23	25.83
Bra014801.1-P	Field mustard	plastid	24.27	24.39

Protein Annotations

KEGG:00010+1.8.1.4	KEGG:00020+1.8.1.4	KEGG:00260+1.8.1.4	KEGG:00280+1.8.1.4	KEGG:00620+1.8.1.4	KEGG:00640+1.8.1.4
Gene3D:3.30.390.30	Gene3D:3.50.50.60	MapMan:5.1.2.2.3	EnsemblPlantsGene:Bra001645	EnsemblPlants:Bra001645.1	EnsemblPlants:Bra001645.1-P
InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	InterPro:FAD/NAD-linked_Rdtase_dimer_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004148	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536
GO:GO:0009570	GO:GO:0009941	GO:GO:0009987	GO:GO:0016491	GO:GO:0016668	GO:GO:0019725
GO:GO:0045454	GO:GO:0046685	GO:GO:0050660	GO:GO:0055114	InterPro:IPR016156	InterPro:IPR036188
InterPro:Lipoamide_DH	UniProt:M4CBR5	PFAM:PF02852	PFAM:PF07992	PRINTS:PR00368	PRINTS:PR00411
ScanProsite:PS00076	PANTHER:PTHR22912	PANTHER:PTHR22912:SF196	InterPro:Pyr_OxRdtase_I_AS	InterPro:Pyr_nucl-diS_OxRdtase_dimer	SUPFAM:SSF51905
SUPFAM:SSF55424	TIGRFAMs:TIGR01350	UniParc:UPI0002540AD2	SEG:seg	:	:

Description

AT3G16950 (E=4e-292) LPD1, ptlpd1 | LPD1 (LIPOAMIDE DEHYDROGENASE 1); dihydrolipoyl dehydrogenase

Coordinates

chrA03:-:17672682..17676127

Molecular Weight (calculated)

66126.8 Da

IEP (calculated)

8.372

GRAVY (calculated)

-0.065

Length

618 amino acids

Sequence
(BLAST)

001: MQSAIALPFS QTPLTRPSRL LGSTKSIFST PRSLQFCGLR REAFCSSPST HLTLRSDRVR IPSTRFKVSA AATTNGAPPP KSFDYDLIII GAGVGGHGAA
101: LHAVEKGLKT AIIEGDVVGG TCVNRGCVPS KALLAVSGRM RELQNEHHMK SFGLQVSAAG YDRQGVADHA NNLATKIRNN LTNSMKALGV DILTGFGSVL
201: GPQKVKYGKD NIITAKNIII ATGSVPFVPK GIEVDGKTVI TSDHALKLES VPDWIAIVGS GYIGLEFSDV YTALGSEVTF IEALDQLMPG FDPEISKLAQ
301: RVLINPRKID YHTGVFASKI TPAKDGKPVM IELIDAKTKE HKDTLEVDAA LIATGRAPFT NGLGLENVNV VTQRGFIPVD ERMRVIDGNG KLVPNLYCIG
401: DANGKLMLAH AASAQGISVV EQVTGRDHVL NHLSIPAACF THPEISMVGL TEPQAREKGE KEGFKVSVAK TSFKANTKAL AENEGEGIAK MIYRPDNGEI
501: LGVHIFGLHA ADLIHEASNA IALGTRIQDI KLAVHAHPTL SEVLDELFKA AKVEGHATTK TGDAKIKLNM NEDGPRGPSD DEKQPSLSKD LIVRSTSLSS
601: FVEDIYARVM SLVSRVFV

Best Arabidopsis Sequence Match ( AT3G16950.2 )
(BLAST)

001: MQSAMALSFS QTSFTRPNHV LGSSGSVFST PRSLRFCGLR REAFGFSTSN QLAIRSNRIQ FLSRKSFQVS ASASSNGNGA PPKSFDYDLI IIGAGVGGHG
101: AALHAVEKGL KTAIIEGDVV GGTCVNRGCV PSKALLAVSG RMRELQNEHH MKSFGLQVSA AGYDRQGVAD HANNLATKIR NNLTNSMKAI GVDILTGFGS
201: VLGPQKVKYG KDNIITAKDI IIATGSVPFV PKGIEVDGKT VITSDHALKL ESVPEWIAIV GSGYIGLEFS DVYTALGSEV TFIEALDQLM PGFDPEISKL
301: AQRVLINPRK IDYHTGVFAS KITPARDGKP VLIELIDAKT KEPKDTLEVD AALIATGRAP FTNGLGLENV NVVTQRGFIP VDERMRVIDG KGTLVPNLYC
401: IGDANGKLML AHAASAQGIS VVEQVSGRDH VLNHLSIPAA CFTHPEISMV GLTEPQAKEK GEKEGFKVSV VKTSFKANTK ALAENEGEGI AKMIYRPDNG
501: EILGVHIFGL HAADLIHEAS NAIALGTRIQ DIKLAVHAHP TLSEVLDELF KAAKVESHAT TRTGDAKIKL NTNQEDRKGR RRGGDDEKQP SVSKDLKDIS
601: TRPSSFFENI SVGVLSLLSL IFV

Arabidopsis Description

LPD1Dihydrolipoyl dehydrogenase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:A8MS68]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.