Factsheet for GSMUA_Achr1P18490_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P12660_001	Banana	plastid	81.34	40.74
VIT_05s0077g01210.t01	Wine grape	plastid	71.83	35.73
Os01t0337900-01	Rice	plastid	70.07	35.47
KXG32441	Sorghum	plastid	68.66	34.76
EES19070	Sorghum	plastid	67.96	34.34
Solyc05g053100.2.1	Tomato	nucleus	67.96	33.8
PGSC0003DMT400069799	Potato	mitochondrion, plastid	67.61	33.68
TraesCS1A01G099500.2	Wheat	plastid	66.9	33.45
Zm00001d009779_P002	Maize	plastid	68.66	33.33
KRH02332	Soybean	endoplasmic reticulum, nucleus	65.49	32.63
TraesCS1B01G124900.1	Wheat	plastid	67.25	32.43
TraesCS1D01G107400.1	Wheat	plastid	67.25	32.43
Bra033540.1-P	Field mustard	plastid	64.08	32.33
HORVU1Hr1G023060.8	Barley	plastid	66.2	32.25
CDY32221	Canola	plastid	62.32	32.24
CDY34436	Canola	plastid	61.97	32.12
KRH11978	Soybean	endoplasmic reticulum, nucleus	63.73	32.04
AT4G16155.1	Thale cress	plastid	63.38	31.75
Zm00001d009212_P004	Maize	extracellular	68.31	31.6
GSMUA_AchrUn_...	Banana	cytosol	10.21	31.18
CDX82387	Canola	plastid	64.44	29.61
Bra001645.1-P	Field mustard	plastid	64.08	29.45
KRH50756	Soybean	endoplasmic reticulum, nucleus	64.79	29.25
CDX75895	Canola	plastid	63.38	29.17
AT3G16950.2	Thale cress	plastid	63.38	28.89
Bra012738.1-P	Field mustard	peroxisome	17.61	24.04
CDX90541	Canola	extracellular, nucleus, peroxisome	17.25	23.56
CDX93023	Canola	cytosol, mitochondrion	4.23	17.65
GSMUA_Achr2P02040_001	Banana	mitochondrion	28.17	17.09
GSMUA_Achr11P...	Banana	mitochondrion	27.11	16.45
GSMUA_Achr3P29340_001	Banana	plastid	29.23	14.85
GSMUA_Achr1P10930_001	Banana	cytosol	21.48	12.5
CDY09711	Canola	plasma membrane	13.73	10.29
GSMUA_AchrUn_...	Banana	cytosol	9.51	7.52
GSMUA_Achr9P21540_001	Banana	cytosol	4.23	7.5
KRH37006	Soybean	cytosol	1.76	1.47
PGSC0003DMT400069988	Potato	cytosol	0.0	0.0
Os05t0156700-01	Rice	plastid	0.0	0.0

Protein Annotations

Gene3D:3.50.50.60	MapMan:35.1	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016668	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr1G18490_001
EnsemblPlants:GSMUA_Achr1P18490_001	EnsemblPlants:GSMUA_Achr1T18490_001	InterPro:IPR036188	UniProt:M0S107	PFAM:PF07992	PRINTS:PR00368
PRINTS:PR00411	ScanProsite:PS00076	PANTHER:PTHR22912	PANTHER:PTHR22912:SF196	InterPro:Pyr_OxRdtase_I_AS	SUPFAM:SSF51905
UniParc:UPI0002953E08	SEG:seg	:	:	:	:

Description

dihydrolipoyl dehydrogenase, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G18490_001]

Coordinates

chr1:+:13825617..13832542

Molecular Weight (calculated)

29714.7 Da

IEP (calculated)

8.958

GRAVY (calculated)

0.106

Length

284 amino acids

Sequence
(BLAST)

001: MPASLSLSLP FPTAAPPASD PSAAAAPFGA FCSYGLRFCG LRREDLSLRS LNWAASGRIT PDSSRRFSRK ILAVVKDNGS PAKVFDYDLV IIGAGVGSHG
101: AALHAVQKGL KTTIIEGDIV GGTCVNRGCV PSKALLAVSG CMRELHDEHH LKALGLQVTS PGYNRQSVAD HANNLASKIQ INLTNSLKAL GVDKLTGVGT
201: IVGTQKVKYG KVGFPGTEIT ARNTIIASGS VPFVPNGIEV DGKTVFTSDH ALKLERVPDW IAIVGSGYIG LEFSDVYTAL GSEV

Best Arabidopsis Sequence Match ( AT3G16950.1 )
(BLAST)

001: MQSAMALSFS QTSFTRPNHV LGSSGSVFST PRSLRFCGLR REAFGFSTSN QLAIRSNRIQ FLSRKSFQVS ASASSNGNGA PPKSFDYDLI IIGAGVGGHG
101: AALHAVEKGL KTAIIEGDVV GGTCVNRGCV PSKALLAVSG RMRELQNEHH MKSFGLQVSA AGYDRQGVAD HANNLATKIR NNLTNSMKAI GVDILTGFGS
201: VLGPQKVKYG KDNIITAKDI IIATGSVPFV PKGIEVDGKT VITSDHALKL ESVPEWIAIV GSGYIGLEFS DVYTALGSEV TFIEALDQLM PGFDPEISKL
301: AQRVLINPRK IDYHTGVFAS KITPARDGKP VLIELIDAKT KEPKDTLEVD AALIATGRAP FTNGLGLENV NVVTQRGFIP VDERMRVIDG KGTLVPNLYC
401: IGDANGKLML AHAASAQGIS VVEQVSGRDH VLNHLSIPAA CFTHPEISMV GLTEPQAKEK GEKEGFKVSV VKTSFKANTK ALAENEGEGI AKMIYRPDNG
501: EILGVHIFGL HAADLIHEAS NAIALGTRIQ DIKLAVHAHP TLSEVLDELF KAAKVESHAT TRTVSEKVVV

Arabidopsis Description

LPD1Dihydrolipoyl dehydrogenase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:A8MS68]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.