CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
peroxisome 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, peroxisome, plasma membrane
BaCelLo:	cytosol
MultiLoc:	peroxisome
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069988	Potato	cytosol	34.3	76.92
Os05t0156700-01	Rice	plastid	44.59	72.53
KRH37006	Soybean	cytosol	52.77	59.0
CDY32221	Canola	plastid	69.66	48.09
CDY34436	Canola	plastid	69.39	47.99
AT4G16155.1	Thale cress	plastid	69.13	46.21
KRH11978	Soybean	endoplasmic reticulum, nucleus	64.64	43.36
PGSC0003DMT400069799	Potato	mitochondrion, plastid	65.17	43.33
VIT_05s0077g01210.t01	Wine grape	plastid	65.17	43.26
KRH02332	Soybean	endoplasmic reticulum, nucleus	64.64	42.98
Solyc05g053100.2.1	Tomato	nucleus	64.38	42.73
PGSC0003DMT400007182	Potato	extracellular	64.12	42.63
Solyc01g100360.2.1	Tomato	plastid	64.12	42.63
CDX75895	Canola	plastid	67.55	41.49
EES19070	Sorghum	plastid	61.48	41.46
CDX82387	Canola	plastid	67.55	41.42
Os01t0337900-01	Rice	plastid	61.21	41.35
KXG32441	Sorghum	plastid	61.21	41.35
TraesCS1A01G099500.2	Wheat	plastid	60.95	40.67
VIT_14s0060g01330.t01	Wine grape	plastid	62.53	40.31
Zm00001d009779_P002	Maize	plastid	61.74	40.0
GSMUA_Achr3P12660_001	Banana	plastid	59.1	39.51
CDX90541	Canola	extracellular, nucleus, peroxisome	21.64	39.42
HORVU1Hr1G023060.8	Barley	plastid	60.42	39.28
KRH50756	Soybean	endoplasmic reticulum, nucleus	65.17	39.27
TraesCS1B01G124900.1	Wheat	plastid	60.95	39.22
TraesCS1D01G107400.1	Wheat	plastid	60.69	39.05
Zm00001d009212_P004	Maize	extracellular	61.21	37.78
VIT_14s0060g01410.t01	Wine grape	cytosol	20.05	31.41
CDY20935	Canola	mitochondrion	24.01	17.95
CDX93639	Canola	mitochondrion	24.01	17.95
CDX92121	Canola	mitochondrion	23.22	17.46
CDX95864	Canola	mitochondrion	22.96	17.19
GSMUA_Achr1P18490_001	Banana	plastid	10.29	13.73
CDX73461	Canola	plastid	18.73	12.66
CDY69892	Canola	plastid	18.73	12.63
CDX85155	Canola	cytosol	15.57	12.19
CDX77463	Canola	cytosol	15.57	12.14
CDX92998	Canola	cytosol	15.3	11.98
CDY13217	Canola	plastid	18.73	11.79
CDX94838	Canola	cytosol	16.09	11.53
CDX76141	Canola	plastid	18.21	11.4
CDX94793	Canola	endoplasmic reticulum	4.49	10.18
CDX93023	Canola	cytosol, mitochondrion	1.58	8.82

Protein Annotations

Gene3D:3.30.390.30	Gene3D:3.50.50.60	MapMan:35.1	GO:A0A078F8P3	UniProt:A0A078F8P3	EnsemblPlants:CDY09711
ProteinID:CDY09711	ProteinID:CDY09711.1	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	InterPro:FAD/NAD-linked_Rdtase_dimer_sf	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0019725	GO:GO:0045454	GO:GO:0050660
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00031382001	InterPro:IPR016156	InterPro:IPR036188	PFAM:PF02852	PFAM:PF07992
PRINTS:PR00411	PANTHER:PTHR22912	PANTHER:PTHR22912:SF196	InterPro:Pyr_nucl-diS_OxRdtase_dimer	SUPFAM:SSF51905	SUPFAM:SSF55424
UniParc:UPI0004EF00F2	SEG:seg	:	:	:	:

Description

BnaC07g33500DBnaC07g33500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F8P3]

Coordinates

chrLK031998:+:544957..547058

Molecular Weight (calculated)

41794.0 Da

IEP (calculated)

6.835

GRAVY (calculated)

0.223

Length

379 amino acids

Sequence
(BLAST)

001: MELLPIMIWS SSELELADTE LHCTPCRYIT MKLIDILIVS AAGYDRHGVA DHASNLATKI RNNLTNSMKA LVRFALEYDQ VVFVCLLLSV KFLFLSVSAK
101: GYFFCLLKGL SVSWLAQRFL INPRKFDYHT GVFASKVEAL FISWILDIIW LFCRFLFEPK DTLEVDAALI ATGRAPFTKM VLVWTLENIN VATQRGFIPV
201: DERMRVIDGN GKLVPHLYCI GDANGKLMLA HAASAQGISV VEQVTGRDHV LNHLSIPAAC FTHPEISMVG LTEPQAREKA EKEGFKVSIA KDKFQGEHKG
301: PTALAENEGE GLAKMIYRPD NGEILGVHIF GLHAADLIHE ASNAIALGTR IQPVVDELFK AAKVESPAST TAQSVKAAV

Best Arabidopsis Sequence Match ( AT4G16155.1 )
(BLAST)

001: MQSVLSLSFS QASLPLANRT LCSSNAAPST PRNLRFCGLR REAFCFSPSK QLTSCRFHIQ SRRIEVSAAA SSSAGNGAPS KSFDYDLIII GAGVGGHGAA
101: LHAVEKGLKT AIIEGDVVGG TCVNRGCVPS KALLAVSGRM RELQNEHHMK AFGLQVSAAG YDRQGVADHA SNLATKIRNN LTNSMKALGV DILTGFGAVL
201: GPQKVKYGDN IITGKDIIIA TGSVPFVPKG IEVDGKTVIT SDHALKLESV PDWIAIVGSG YIGLEFSDVY TALGSEVTFI EALDQLMPGF DPEISKLAQR
301: VLINTRKIDY HTGVFASKIT PAKDGKPVLI ELIDAKTKEP KDTLEVDAAL IATGRAPFTN GLGLENINVT TQRGFIPVDE RMRVIDGNGK LVPHLYCIGD
401: ANGKLMLAHA ASAQGISVVE QVTGRDHVLN HLSIPAACFT HPEISMVGLT EPQAREKAEK EGFKVSIAKT SFKANTKALA ENEGEGLAKM IYRPDNGEIL
501: GVHIFGLHAA DLIHEASNAI ALGTRIQDIK LAVHAHPTLS EVVDELFKAA KVDSPASVTA QSVKVTV

Arabidopsis Description

LPD2Dihydrolipoyl dehydrogenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4JLP5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.