Factsheet for PGSC0003DMT400069988

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 3
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0156700-01	Rice	plastid	81.66	59.23
KRH37006	Soybean	cytosol	85.8	42.77
CDY09711	Canola	plasma membrane	76.92	34.3
PGSC0003DMT400069799	Potato	mitochondrion, plastid	91.72	27.19
Solyc05g053100.2.1	Tomato	nucleus	91.12	26.97
CDY32221	Canola	plastid	84.62	26.05
KRH11978	Soybean	endoplasmic reticulum, nucleus	86.98	26.02
CDY34436	Canola	plastid	84.02	25.91
VIT_05s0077g01210.t01	Wine grape	plastid	86.39	25.57
Bra033540.1-P	Field mustard	plastid	84.62	25.4
AT4G16155.1	Thale cress	plastid	85.21	25.4
PGSC0003DMT400007182	Potato	extracellular	85.21	25.26
KRH02332	Soybean	endoplasmic reticulum, nucleus	85.21	25.26
KXG32441	Sorghum	plastid	80.47	24.24
Os01t0337900-01	Rice	plastid	79.29	23.89
EES19070	Sorghum	plastid	78.7	23.67
KRH50756	Soybean	endoplasmic reticulum, nucleus	86.98	23.37
Zm00001d009779_P002	Maize	plastid	79.29	22.91
TraesCS1A01G099500.2	Wheat	plastid	76.92	22.89
CDX75895	Canola	plastid	83.43	22.85
CDX82387	Canola	plastid	83.43	22.82
Bra001645.1-P	Field mustard	plastid	83.43	22.82
GSMUA_Achr3P12660_001	Banana	plastid	75.74	22.57
HORVU1Hr1G023060.8	Barley	plastid	76.92	22.3
AT3G16950.2	Thale cress	plastid	81.66	22.15
Zm00001d009212_P004	Maize	extracellular	80.47	22.15
TraesCS1D01G107400.1	Wheat	plastid	76.92	22.07
TraesCS1B01G124900.1	Wheat	plastid	76.92	22.07
Bra012738.1-P	Field mustard	peroxisome	20.71	16.83
CDX90541	Canola	extracellular, nucleus, peroxisome	20.71	16.83
PGSC0003DMT400069840	Potato	mitochondrion	34.32	11.6
PGSC0003DMT400011741	Potato	mitochondrion	32.54	10.91
PGSC0003DMT400019491	Potato	cytosol, extracellular, plastid	23.08	7.01
PGSC0003DMT400076297	Potato	cytosol	9.47	4.17
CDX93023	Canola	cytosol, mitochondrion	0.59	1.47
GSMUA_Achr1P18490_001	Banana	plastid	0.0	0.0

Protein Annotations

Gene3D:3.30.390.30	Gene3D:3.50.50.60	MapMan:35.1	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-linked_Rdtase_dimer_sf	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0019725	GO:GO:0045454	GO:GO:0050660
GO:GO:0055114	InterPro:IPR016156	InterPro:IPR036188	UniProt:M1CLJ1	PFAM:PF02852	EnsemblPlantsGene:PGSC0003DMG400027215
PGSC:PGSC0003DMG400027215	EnsemblPlants:PGSC0003DMT400069988	PRINTS:PR00411	PANTHER:PTHR22912	PANTHER:PTHR22912:SF142	InterPro:Pyr_nucl-diS_OxRdtase_dimer
SUPFAM:SSF51905	SUPFAM:SSF55424	UniParc:UPI0002955D3B	:	:	:

Description

Dihydrolipoyl dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400027215]

Coordinates

chr5:-:48695377..48696691

Molecular Weight (calculated)

18296.0 Da

IEP (calculated)

6.163

GRAVY (calculated)

-0.060

Length

169 amino acids

Sequence
(BLAST)

001: MCSVDERMRV VDANGKLVPH LYCIGDANGK MILAHAASAQ GISVVEQVSE RDHVLNHLSI PAACFTHPEI SMVGLTEPQA REKAEKEGLE ISIAKTKALA
101: ENKGKDLQRP DNGEILGVHI FGMHAADLIH EASNAIALGT SIQDIKFAVH AHPTLSEVLD ELFKSRAYL

Best Arabidopsis Sequence Match ( AT4G16155.1 )
(BLAST)

001: MQSVLSLSFS QASLPLANRT LCSSNAAPST PRNLRFCGLR REAFCFSPSK QLTSCRFHIQ SRRIEVSAAA SSSAGNGAPS KSFDYDLIII GAGVGGHGAA
101: LHAVEKGLKT AIIEGDVVGG TCVNRGCVPS KALLAVSGRM RELQNEHHMK AFGLQVSAAG YDRQGVADHA SNLATKIRNN LTNSMKALGV DILTGFGAVL
201: GPQKVKYGDN IITGKDIIIA TGSVPFVPKG IEVDGKTVIT SDHALKLESV PDWIAIVGSG YIGLEFSDVY TALGSEVTFI EALDQLMPGF DPEISKLAQR
301: VLINTRKIDY HTGVFASKIT PAKDGKPVLI ELIDAKTKEP KDTLEVDAAL IATGRAPFTN GLGLENINVT TQRGFIPVDE RMRVIDGNGK LVPHLYCIGD
401: ANGKLMLAHA ASAQGISVVE QVTGRDHVLN HLSIPAACFT HPEISMVGLT EPQAREKAEK EGFKVSIAKT SFKANTKALA ENEGEGLAKM IYRPDNGEIL
501: GVHIFGLHAA DLIHEASNAI ALGTRIQDIK LAVHAHPTLS EVVDELFKAA KVDSPASVTA QSVKVTV

Arabidopsis Description

LPD2Dihydrolipoyl dehydrogenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4JLP5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.