Factsheet for GSMUA_Achr3P12660_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0156700-01	Rice	plastid	34.57	84.12
Os01t0337900-01	Rice	plastid	81.31	82.17
GSMUA_Achr1P18490_001	Banana	plastid	40.74	81.34
KXG32441	Sorghum	plastid	80.25	81.11
VIT_05s0077g01210.t01	Wine grape	plastid	81.31	80.74
EES19070	Sorghum	plastid	79.72	80.43
KRH02332	Soybean	endoplasmic reticulum, nucleus	78.84	78.42
PGSC0003DMT400069799	Potato	mitochondrion, plastid	77.95	77.54
Solyc05g053100.2.1	Tomato	nucleus	77.78	77.23
KRH11978	Soybean	endoplasmic reticulum, nucleus	76.9	77.17
TraesCS1A01G099500.2	Wheat	plastid	77.07	76.94
CDY34436	Canola	plastid	74.25	76.82
CDY32221	Canola	plastid	73.9	76.32
Zm00001d009779_P002	Maize	plastid	78.66	76.24
Bra033540.1-P	Field mustard	plastid	75.31	75.84
PGSC0003DMT400069988	Potato	cytosol	22.57	75.74
AT4G16155.1	Thale cress	plastid	75.66	75.66
HORVU1Hr1G023060.8	Barley	plastid	76.54	74.44
TraesCS1D01G107400.1	Wheat	plastid	77.07	74.19
TraesCS1B01G124900.1	Wheat	plastid	77.07	74.19
Zm00001d009212_P004	Maize	extracellular	79.72	73.62
KRH37006	Soybean	cytosol	43.21	72.27
KRH50756	Soybean	endoplasmic reticulum, nucleus	77.95	70.27
CDX82387	Canola	plastid	75.66	69.42
CDX75895	Canola	plastid	75.48	69.37
Bra001645.1-P	Field mustard	plastid	75.31	69.09
AT3G16950.2	Thale cress	plastid	74.96	68.22
Bra012738.1-P	Field mustard	peroxisome	22.22	60.58
CDX90541	Canola	extracellular, nucleus, peroxisome	22.05	60.1
CDY09711	Canola	plasma membrane	39.51	59.1
GSMUA_Achr2P02040_001	Banana	mitochondrion	31.04	37.61
GSMUA_Achr11P...	Banana	mitochondrion	30.34	36.75
GSMUA_AchrUn_...	Banana	cytosol	5.64	34.41
GSMUA_Achr3P29340_001	Banana	plastid	28.75	29.16
GSMUA_Achr1P10930_001	Banana	cytosol	23.1	26.84
GSMUA_AchrUn_...	Banana	cytosol	16.75	26.46
GSMUA_Achr9P21540_001	Banana	cytosol	7.23	25.62
CDX93023	Canola	cytosol, mitochondrion	2.47	20.59

Protein Annotations

Gene3D:3.30.390.30	Gene3D:3.50.50.60	MapMan:5.1.2.2.3	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	InterPro:FAD/NAD-linked_Rdtase_dimer_sf
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0016491
GO:GO:0016668	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0050660	GO:GO:0055114
EnsemblPlantsGene:GSMUA_Achr3G12660_001	EnsemblPlants:GSMUA_Achr3P12660_001	EnsemblPlants:GSMUA_Achr3T12660_001	InterPro:IPR016156	InterPro:IPR036188	UniProt:M0SE33
PFAM:PF02852	PFAM:PF07992	PIRSF:PIRSF000350	PRINTS:PR00368	PRINTS:PR00411	ScanProsite:PS00076
PANTHER:PTHR22912	PANTHER:PTHR22912:SF196	InterPro:Pyr_OxRdtase_I_AS	InterPro:Pyr_nuc-diS_OxRdtase	InterPro:Pyr_nucl-diS_OxRdtase_dimer	SUPFAM:SSF51905
SUPFAM:SSF55424	UniParc:UPI000294BF0B	SEG:seg	:	:	:

Description

Dihydrolipoyl dehydrogenase [Source:GMGC_GENE;Acc:GSMUA_Achr3G12660_001]

Coordinates

chr3:-:9388830..9402294

Molecular Weight (calculated)

60176.5 Da

IEP (calculated)

7.161

GRAVY (calculated)

0.023

Length

567 amino acids

Sequence
(BLAST)

001: MPASVSLSLS LPLSPTARSD PSVAASPFGA FRRSGLRFCG LRREVLSLRS LNSEASGRIS PYPARGLSNK VLAAAKSNGS PTKGFDYDLV IIGAGVGGHG
101: AALHAVEKGL KTAIIEGDIV GGTCVNRGCV PSKALLAVSG RMRELQDEHH LKALGLQVAS PGYDRQSVAD HANNLASKIR SNLTNSMKAL GVDILTGVGT
201: IVGTQRVKYG KVGFPDTEVT ARNIIIATGS VPFVPNGIEV DGKTVFTSDH ALKLEWVPDW IAIVGSGYIG LEFSDVYTAL GSEVTFVEAL DQLMPGFDPE
301: IAKLAQRILI NPRKIDHHTG VFAKKITPAK DRKPVLIELI DAKTKEPKDT LEVDAALIAT GRAPFTKGLG LENINVTTVR GFVPVDEHMQ VMDADGNLVP
401: HIYCIGDANG KLMLAHAAIV EQISGNNNVL NHLSIPAACF THPEISMVGL TEPQAREKSE KDGFEIRVAK TSFKANTKAL AENEGEGLAK LIYRPDTGEI
501: LGVHILGLHA ADLIHEASNA IALGTRIQDI RFAVHAHPTL SEVLDELFKS AKVNVGTSPS VSEPVAV

Best Arabidopsis Sequence Match ( AT3G16950.1 )
(BLAST)

001: MQSAMALSFS QTSFTRPNHV LGSSGSVFST PRSLRFCGLR REAFGFSTSN QLAIRSNRIQ FLSRKSFQVS ASASSNGNGA PPKSFDYDLI IIGAGVGGHG
101: AALHAVEKGL KTAIIEGDVV GGTCVNRGCV PSKALLAVSG RMRELQNEHH MKSFGLQVSA AGYDRQGVAD HANNLATKIR NNLTNSMKAI GVDILTGFGS
201: VLGPQKVKYG KDNIITAKDI IIATGSVPFV PKGIEVDGKT VITSDHALKL ESVPEWIAIV GSGYIGLEFS DVYTALGSEV TFIEALDQLM PGFDPEISKL
301: AQRVLINPRK IDYHTGVFAS KITPARDGKP VLIELIDAKT KEPKDTLEVD AALIATGRAP FTNGLGLENV NVVTQRGFIP VDERMRVIDG KGTLVPNLYC
401: IGDANGKLML AHAASAQGIS VVEQVSGRDH VLNHLSIPAA CFTHPEISMV GLTEPQAKEK GEKEGFKVSV VKTSFKANTK ALAENEGEGI AKMIYRPDNG
501: EILGVHIFGL HAADLIHEAS NAIALGTRIQ DIKLAVHAHP TLSEVLDELF KAAKVESHAT TRTVSEKVVV

Arabidopsis Description

LPD1Dihydrolipoyl dehydrogenase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:A8MS68]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.