Factsheet for VIT_05s0077g01210.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0156700-01	Rice	plastid	35.38	86.7
PGSC0003DMT400069988	Potato	cytosol	25.57	86.39
KRH02332	Soybean	endoplasmic reticulum, nucleus	86.16	86.32
CDY34436	Canola	plastid	82.14	85.58
CDY32221	Canola	plastid	82.14	85.43
KRH11978	Soybean	endoplasmic reticulum, nucleus	83.54	84.42
Bra033540.1-P	Field mustard	plastid	83.19	84.37
AT4G16155.1	Thale cress	plastid	83.19	83.77
PGSC0003DMT400069799	Potato	mitochondrion, plastid	83.54	83.68
Solyc05g053100.2.1	Tomato	nucleus	83.01	83.01
GSMUA_Achr3P12660_001	Banana	plastid	80.74	81.31
Os01t0337900-01	Rice	plastid	79.86	81.28
VIT_14s0060g01330.t01	Wine grape	plastid	83.01	80.61
EES19070	Sorghum	plastid	79.16	80.43
KRH37006	Soybean	cytosol	47.64	80.24
KXG32441	Sorghum	plastid	78.81	80.21
TraesCS1A01G099500.2	Wheat	plastid	78.28	78.7
VIT_14s0060g01410.t01	Wine grape	cytosol	33.27	78.51
KRH50756	Soybean	endoplasmic reticulum, nucleus	85.46	77.58
Zm00001d009779_P002	Maize	plastid	79.16	77.27
TraesCS1B01G124900.1	Wheat	plastid	79.16	76.74
TraesCS1D01G107400.1	Wheat	plastid	78.98	76.57
CDX82387	Canola	plastid	82.84	76.54
CDX75895	Canola	plastid	82.66	76.5
Bra001645.1-P	Field mustard	plastid	82.66	76.38
HORVU1Hr1G023060.8	Barley	plastid	77.93	76.33
AT3G16950.2	Thale cress	plastid	82.49	75.6
Zm00001d009212_P004	Maize	extracellular	78.63	73.13
GSMUA_Achr1P18490_001	Banana	plastid	35.73	71.83
Bra012738.1-P	Field mustard	peroxisome	24.34	66.83
CDX90541	Canola	extracellular, nucleus, peroxisome	24.17	66.35
CDY09711	Canola	plasma membrane	43.26	65.17
VIT_05s0020g00380.t01	Wine grape	mitochondrion	31.0	35.26
VIT_05s0051g00870.t01	Wine grape	cytosol	23.99	27.62
VIT_07s0141g00390.t01	Wine grape	plastid	26.8	27.37
CDX93023	Canola	cytosol, mitochondrion	2.28	19.12

Protein Annotations

EntrezGene:100246616	wikigene:100246616	Gene3D:3.30.390.30	Gene3D:3.50.50.60	MapMan:5.1.2.2.3	ProteinID:CBI22903
ProteinID:CBI22903.3	UniProt:D7SY46	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	InterPro:FAD/NAD-linked_Rdtase_dimer_sf	EMBL:FN595246
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0016491
GO:GO:0016668	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0050660	GO:GO:0055114
InterPro:IPR016156	InterPro:IPR036188	EntrezGene:LOC100246616	wikigene:LOC100246616	PFAM:PF02852	PFAM:PF07992
PIRSF:PIRSF000350	PRINTS:PR00368	PRINTS:PR00411	ScanProsite:PS00076	PANTHER:PTHR22912	PANTHER:PTHR22912:SF196
InterPro:Pyr_OxRdtase_I_AS	InterPro:Pyr_nuc-diS_OxRdtase	InterPro:Pyr_nucl-diS_OxRdtase_dimer	SUPFAM:SSF51905	SUPFAM:SSF55424	TIGR:TC58867
TIGR:TC62659	UniParc:UPI0001983295	ArrayExpress:VIT_05s0077g01210	EnsemblPlantsGene:VIT_05s0077g01210	EnsemblPlants:VIT_05s0077g01210.t01	unigene:Vvi.9259
RefSeq:XP_002276853	RefSeq:XP_002276853.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5:+:964696..973214

Molecular Weight (calculated)

60425.7 Da

IEP (calculated)

7.363

GRAVY (calculated)

0.015

Length

571 amino acids

Sequence
(BLAST)

001: MHSSLSLSFS SSTAIPRSGH SSELSCAAPP SPLNLRFCGL RREALGFSSP KRNDSCRVIV SSRGRFKKVS ASVSDNGSAP KAFDYDLVII GAGVGGHGAA
101: LHAVEKGLKT AIIEGDVVGG TCVNRGCVPS KALLAVSGRM RELQSEHHLK ALGLQVSAAG YDRQGVADHA NNLASKIRNN LTNSMKALGV DILTGVGTIL
201: GPQKVKYGKV GFSENVITAK NIIIATGSVP FVPKGIEVDG KTVITSDHAL KLESVPDWIA IVGSGYIGLE FSDVYTALGS EVTFIEALDQ LMPGFDPEIG
301: KLAQRVLINP RKIDYHTGVF ASKITPAKDG KPVRIELIDA KTKEPKDALE VDAALIATGR APFTNGLGLE NISVVTQRGF IPVDERMRVI DADGNLVPHL
401: YCIGDANGKM MLAHAASAQG ISVVEQVTGK DHVLNHLSIP AACFTHPEIS MVGLTEPQAR EKAEKEGFEV SVAKTSFKAN TKALAENEGE GLAKLIYRPD
501: NGEILGVHIF GLHAADLIHE ASNAIALGTR IQDIKFAVHA HPTLSEVLDE LFKSAKVHAH VPSPVSEPVT V

Best Arabidopsis Sequence Match ( AT3G16950.1 )
(BLAST)

001: MQSAMALSFS QTSFTRPNHV LGSSGSVFST PRSLRFCGLR REAFGFSTSN QLAIRSNRIQ FLSRKSFQVS ASASSNGNGA PPKSFDYDLI IIGAGVGGHG
101: AALHAVEKGL KTAIIEGDVV GGTCVNRGCV PSKALLAVSG RMRELQNEHH MKSFGLQVSA AGYDRQGVAD HANNLATKIR NNLTNSMKAI GVDILTGFGS
201: VLGPQKVKYG KDNIITAKDI IIATGSVPFV PKGIEVDGKT VITSDHALKL ESVPEWIAIV GSGYIGLEFS DVYTALGSEV TFIEALDQLM PGFDPEISKL
301: AQRVLINPRK IDYHTGVFAS KITPARDGKP VLIELIDAKT KEPKDTLEVD AALIATGRAP FTNGLGLENV NVVTQRGFIP VDERMRVIDG KGTLVPNLYC
401: IGDANGKLML AHAASAQGIS VVEQVSGRDH VLNHLSIPAA CFTHPEISMV GLTEPQAKEK GEKEGFKVSV VKTSFKANTK ALAENEGEGI AKMIYRPDNG
501: EILGVHIFGL HAADLIHEAS NAIALGTRIQ DIKLAVHAHP TLSEVLDELF KAAKVESHAT TRTVSEKVVV

Arabidopsis Description

LPD1Dihydrolipoyl dehydrogenase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:A8MS68]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.