CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0337900-01	Rice	plastid	90.73	90.73
EES19070	Sorghum	plastid	87.52	87.37
Zm00001d009212_P004	Maize	extracellular	94.65	86.48
PGSC0003DMT400069988	Potato	cytosol	24.24	80.47
GSMUA_Achr3P12660_001	Banana	plastid	81.11	80.25
CDY32221	Canola	plastid	77.36	79.05
CDY34436	Canola	plastid	77.18	79.01
VIT_05s0077g01210.t01	Wine grape	plastid	80.21	78.81
Bra033540.1-P	Field mustard	plastid	78.43	78.15
KRH11978	Soybean	endoplasmic reticulum, nucleus	78.07	77.52
AT4G16155.1	Thale cress	plastid	77.9	77.07
Solyc05g053100.2.1	Tomato	nucleus	78.25	76.88
PGSC0003DMT400069799	Potato	mitochondrion, plastid	77.9	76.67
KRH02332	Soybean	endoplasmic reticulum, nucleus	77.9	76.67
KRH37006	Soybean	cytosol	45.45	75.22
CDX82387	Canola	plastid	79.14	71.84
Bra001645.1-P	Field mustard	plastid	78.97	71.68
CDX75895	Canola	plastid	78.79	71.64
AT3G16950.2	Thale cress	plastid	78.79	70.95
KRH50756	Soybean	endoplasmic reticulum, nucleus	78.43	69.95
GSMUA_Achr1P18490_001	Banana	plastid	34.76	68.66
CDY09711	Canola	plasma membrane	41.35	61.21
Bra012738.1-P	Field mustard	peroxisome	22.46	60.58
CDX90541	Canola	extracellular, nucleus, peroxisome	22.28	60.1
EES02889	Sorghum	mitochondrion	30.66	34.13
EES17766	Sorghum	mitochondrion	30.3	34.0
EER95455	Sorghum	plastid	28.16	28.73
OQU91783	Sorghum	plastid	26.74	28.25
KXG31334	Sorghum	cytosol	22.99	26.06
CDX93023	Canola	cytosol, mitochondrion	2.5	20.59

Protein Annotations

Gene3D:3.30.390.30	Gene3D:3.50.50.60	MapMan:5.1.2.2.3	UniProt:A0A1B6Q3D8	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom
InterPro:FAD/NAD-linked_Rdtase_dimer_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987
GO:GO:0016491	GO:GO:0016668	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0050660
GO:GO:0055114	InterPro:IPR016156	InterPro:IPR036188	EnsemblPlants:KXG32441	ProteinID:KXG32441	ProteinID:KXG32441.1
PFAM:PF02852	PFAM:PF07992	PIRSF:PIRSF000350	PRINTS:PR00368	PRINTS:PR00411	ScanProsite:PS00076
PANTHER:PTHR22912	PANTHER:PTHR22912:SF196	InterPro:Pyr_OxRdtase_I_AS	InterPro:Pyr_nuc-diS_OxRdtase	InterPro:Pyr_nucl-diS_OxRdtase_dimer	EnsemblPlantsGene:SORBI_3003G155300
SUPFAM:SSF51905	SUPFAM:SSF55424	UniParc:UPI0001C80B7C	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:+:16971410..16987969

Molecular Weight (calculated)

59467.6 Da

IEP (calculated)

6.763

GRAVY (calculated)

0.058

Length

561 amino acids

Sequence
(BLAST)

001: MSLSAASAAV ASSAAAAYRY DTIRPVSRLR FCGLRREALR LQSPRSTPQL VAARRSVVYA ATAGNGAAAS SEFDYDLVII GAGVGGHGAA LNAVEKGLKT
101: AIIEGDVVGG TCVNRGCVPS KALLAVSGRM RELQDEHHMK SLGLQVSSPG YDRQAVADHA NNLASKIRSN LTNSMKALGV DILTGIGTIV GKQKVRYGKV
201: GFPDNEITAR NIIIATGSVP FVPKGIEIDG KTVFTSDHAL KLESVPEWIA IVGSGYIGLE FSDVYTALGS EVTFVEALDQ LMPGFDPEIA KLAQRILINP
301: RKIDYHTGVF ASKITPAKDG NPVLIELIDA KTKEHKETLE VDAALIATGR APFTKGLGLE NINVVTQRGF VPVDERMQVM DATGNVVPNL YCIGDANGKL
401: MLAHAASAQG ISVVEQISGR DNILNHLSIP AACFTHPEIS MVGLTEPQAR EKADKEGFEI SVVKTSFKAN TKALAENEGD GLAKMIYRPD TGEILGVHIL
501: GLHAADLIHE ASNAIALGTH VQDIKFAVHA HPTLSEVLDE LFKAAKVNTG VLHSINEPVA V

Best Arabidopsis Sequence Match ( AT3G16950.1 )
(BLAST)

001: MQSAMALSFS QTSFTRPNHV LGSSGSVFST PRSLRFCGLR REAFGFSTSN QLAIRSNRIQ FLSRKSFQVS ASASSNGNGA PPKSFDYDLI IIGAGVGGHG
101: AALHAVEKGL KTAIIEGDVV GGTCVNRGCV PSKALLAVSG RMRELQNEHH MKSFGLQVSA AGYDRQGVAD HANNLATKIR NNLTNSMKAI GVDILTGFGS
201: VLGPQKVKYG KDNIITAKDI IIATGSVPFV PKGIEVDGKT VITSDHALKL ESVPEWIAIV GSGYIGLEFS DVYTALGSEV TFIEALDQLM PGFDPEISKL
301: AQRVLINPRK IDYHTGVFAS KITPARDGKP VLIELIDAKT KEPKDTLEVD AALIATGRAP FTNGLGLENV NVVTQRGFIP VDERMRVIDG KGTLVPNLYC
401: IGDANGKLML AHAASAQGIS VVEQVSGRDH VLNHLSIPAA CFTHPEISMV GLTEPQAKEK GEKEGFKVSV VKTSFKANTK ALAENEGEGI AKMIYRPDNG
501: EILGVHIFGL HAADLIHEAS NAIALGTRIQ DIKLAVHAHP TLSEVLDELF KAAKVESHAT TRTVSEKVVV

Arabidopsis Description

LPD1Dihydrolipoyl dehydrogenase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:A8MS68]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.