CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0156700-01	Rice	plastid	40.21	97.0
Zm00001d009779_P002	Maize	plastid	93.95	90.26
KXG32441	Sorghum	plastid	87.37	87.52
TraesCS1A01G099500.2	Wheat	plastid	86.65	85.74
HORVU1Hr1G023060.8	Barley	plastid	87.01	83.88
TraesCS1D01G107400.1	Wheat	plastid	87.37	83.36
TraesCS1B01G124900.1	Wheat	plastid	87.37	83.36
CDY32221	Canola	plastid	77.94	79.78
GSMUA_Achr3P12660_001	Banana	plastid	80.43	79.72
CDY34436	Canola	plastid	77.4	79.38
VIT_05s0077g01210.t01	Wine grape	plastid	80.43	79.16
Bra033540.1-P	Field mustard	plastid	79.0	78.86
PGSC0003DMT400069988	Potato	cytosol	23.67	78.7
KRH02332	Soybean	endoplasmic reticulum, nucleus	79.72	78.6
AT4G16155.1	Thale cress	plastid	78.29	77.6
KRH11978	Soybean	endoplasmic reticulum, nucleus	77.76	77.35
PGSC0003DMT400069799	Potato	mitochondrion, plastid	76.87	75.79
Solyc05g053100.2.1	Tomato	nucleus	76.87	75.66
KRH37006	Soybean	cytosol	45.37	75.22
CDX75895	Canola	plastid	79.72	72.61
CDX82387	Canola	plastid	79.72	72.49
Bra001645.1-P	Field mustard	plastid	79.54	72.33
AT3G16950.2	Thale cress	plastid	79.0	71.27
KRH50756	Soybean	endoplasmic reticulum, nucleus	79.72	71.22
GSMUA_Achr1P18490_001	Banana	plastid	34.34	67.96
Bra012738.1-P	Field mustard	peroxisome	22.78	61.54
CDY09711	Canola	plasma membrane	41.46	61.48
CDX90541	Canola	extracellular, nucleus, peroxisome	22.6	61.06
EES02889	Sorghum	mitochondrion	30.25	33.73
EES17766	Sorghum	mitochondrion	29.72	33.4
EER95455	Sorghum	plastid	28.47	29.09
OQU91783	Sorghum	plastid	26.33	27.87
KXG31334	Sorghum	cytosol	23.49	26.67
CDX93023	Canola	cytosol, mitochondrion	2.31	19.12

Protein Annotations

KEGG:00010+1.8.1.4	KEGG:00020+1.8.1.4	KEGG:00260+1.8.1.4	KEGG:00280+1.8.1.4	KEGG:00620+1.8.1.4	KEGG:00640+1.8.1.4
Gene3D:3.30.390.30	Gene3D:3.50.50.60	MapMan:5.1.2.2.3	EntrezGene:8071187	UniProt:C5Z0L0	EnsemblPlants:EES19070
ProteinID:EES19070	ProteinID:EES19070.1	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	InterPro:FAD/NAD-linked_Rdtase_dimer_sf	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004148	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0016491
GO:GO:0016668	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0050660	GO:GO:0055114
InterPro:IPR016156	InterPro:IPR036188	InterPro:Lipoamide_DH	PFAM:PF02852	PFAM:PF07992	PIRSF:PIRSF000350
PRINTS:PR00368	PRINTS:PR00411	ScanProsite:PS00076	PANTHER:PTHR22912	PANTHER:PTHR22912:SF196	MetaCyc:PWY-5046
MetaCyc:PWY-5084	InterPro:Pyr_OxRdtase_I_AS	InterPro:Pyr_nuc-diS_OxRdtase	InterPro:Pyr_nucl-diS_OxRdtase_dimer	EnsemblPlantsGene:SORBI_3009G052200	SUPFAM:SSF51905
SUPFAM:SSF55424	unigene:Sbi.6398	TIGRFAMs:TIGR01350	UniParc:UPI0001A88CF7	RefSeq:XP_002440640.1	SEG:seg

Description

hypothetical protein

Coordinates

chr9:-:5297612..5304151

Molecular Weight (calculated)

58789.6 Da

IEP (calculated)

6.830

GRAVY (calculated)

0.050

Length

562 amino acids

Sequence
(BLAST)

001: MQSTAAVSVS ASATASRGGA RSEAARRPGG VRVCGLRGEA LACPSLRISQ VPARLAVARA AAATNGAVAG SGGFDYDLVI IGAGVGGHGA ALHAVEEGLK
101: TAIIEGDVVG GTCVNRGCVP SKALLAVSGR MRELHDEHHL KSMGLQVSSP GYDRQGVADH ASNLASKIRS NLTNSMKALG VDILTGVGTI VGKQKVRYGK
201: AGSPDKEITA RNIIIATGSV PFVPKGIEID GKTVFTSDHA LKLESVPDWI AIVGSGYIGL EFSDVYTALG SEVTFVEALD QLMPGFDPEI AKLAQRVLIN
301: PRKIDYHTGV FASKITPAKD GKPVLIELID AKTKEHKETL EVDAALIATG RAPFTKGLGL ENINVVTQRG FVPVDERMRV MDADGNVVPN LYCIGDANGK
401: LMLAHAASAQ GISVVEQISG KDHILNHLSI PAACFTHPEI SMVGLTEPQA REQADKEGFE VNVVKTSFKA NTKALAENEG DGIAKLIYRP DTGEILGVHI
501: LGLHAADLIH EASNAIALGT RVQDIKFAVH AHPTLSEVLD ELFKAAKVNS GVSHSVNEPV AA

Best Arabidopsis Sequence Match ( AT3G16950.1 )
(BLAST)

001: MQSAMALSFS QTSFTRPNHV LGSSGSVFST PRSLRFCGLR REAFGFSTSN QLAIRSNRIQ FLSRKSFQVS ASASSNGNGA PPKSFDYDLI IIGAGVGGHG
101: AALHAVEKGL KTAIIEGDVV GGTCVNRGCV PSKALLAVSG RMRELQNEHH MKSFGLQVSA AGYDRQGVAD HANNLATKIR NNLTNSMKAI GVDILTGFGS
201: VLGPQKVKYG KDNIITAKDI IIATGSVPFV PKGIEVDGKT VITSDHALKL ESVPEWIAIV GSGYIGLEFS DVYTALGSEV TFIEALDQLM PGFDPEISKL
301: AQRVLINPRK IDYHTGVFAS KITPARDGKP VLIELIDAKT KEPKDTLEVD AALIATGRAP FTNGLGLENV NVVTQRGFIP VDERMRVIDG KGTLVPNLYC
401: IGDANGKLML AHAASAQGIS VVEQVSGRDH VLNHLSIPAA CFTHPEISMV GLTEPQAKEK GEKEGFKVSV VKTSFKANTK ALAENEGEGI AKMIYRPDNG
501: EILGVHIFGL HAADLIHEAS NAIALGTRIQ DIKLAVHAHP TLSEVLDELF KAAKVESHAT TRTVSEKVVV

Arabidopsis Description

LPD1Dihydrolipoyl dehydrogenase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:A8MS68]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.