Factsheet for Bra033540.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32221	Canola	plastid	97.51	100.0
AT4G16155.1	Thale cress	plastid	93.96	93.3
PGSC0003DMT400069988	Potato	cytosol	25.4	84.62
Os05t0156700-01	Rice	plastid	34.81	84.12
VIT_05s0077g01210.t01	Wine grape	plastid	84.37	83.19
PGSC0003DMT400007182	Potato	extracellular	84.19	83.16
Solyc01g100360.2.1	Tomato	plastid	84.01	82.98
KRH11978	Soybean	endoplasmic reticulum, nucleus	82.59	82.3
KRH02332	Soybean	endoplasmic reticulum, nucleus	83.13	82.11
Bra001645.1-P	Field mustard	plastid	90.05	82.04
Os01t0337900-01	Rice	plastid	79.22	79.5
EES19070	Sorghum	plastid	78.86	79.0
KXG32441	Sorghum	plastid	78.15	78.43
PGSC0003DMT400069799	Potato	mitochondrion, plastid	79.4	78.42
Solyc05g053100.2.1	Tomato	nucleus	78.86	77.76
TraesCS1A01G099500.2	Wheat	plastid	77.8	77.11
KRH37006	Soybean	cytosol	45.83	76.11
VIT_14s0060g01330.t01	Wine grape	plastid	78.86	75.51
GSMUA_Achr3P12660_001	Banana	plastid	75.84	75.31
Zm00001d009779_P002	Maize	plastid	78.15	75.21
KRH50756	Soybean	endoplasmic reticulum, nucleus	84.01	75.2
TraesCS1B01G124900.1	Wheat	plastid	78.51	75.04
TraesCS1D01G107400.1	Wheat	plastid	78.33	74.87
HORVU1Hr1G023060.8	Barley	plastid	77.44	74.79
VIT_14s0060g01410.t01	Wine grape	cytosol	31.08	72.31
Zm00001d009212_P004	Maize	extracellular	78.15	71.66
Bra012738.1-P	Field mustard	peroxisome	26.11	70.67
GSMUA_Achr1P18490_001	Banana	plastid	32.33	64.08
Bra022204.1-P	Field mustard	mitochondrion	30.37	33.93
Bra018700.1-P	Field mustard	mitochondrion	30.55	33.92
Bra007087.1-P	Field mustard	plastid	27.0	27.0
Bra015006.1-P	Field mustard	cytosol	22.2	25.72
Bra001931.1-P	Field mustard	cytosol	21.67	25.21
Bra014801.1-P	Field mustard	plastid	26.64	24.39

Protein Annotations

KEGG:00010+1.8.1.4	KEGG:00020+1.8.1.4	KEGG:00260+1.8.1.4	KEGG:00280+1.8.1.4	KEGG:00620+1.8.1.4	KEGG:00640+1.8.1.4
Gene3D:3.30.390.30	Gene3D:3.50.50.60	MapMan:5.1.2.2.3	EnsemblPlantsGene:Bra033540	EnsemblPlants:Bra033540.1	EnsemblPlants:Bra033540.1-P
InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	InterPro:FAD/NAD-linked_Rdtase_dimer_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004148	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009536
GO:GO:0009570	GO:GO:0009941	GO:GO:0009987	GO:GO:0016491	GO:GO:0016668	GO:GO:0019725
GO:GO:0022900	GO:GO:0045454	GO:GO:0046685	GO:GO:0050660	GO:GO:0055114	InterPro:IPR016156
InterPro:IPR036188	InterPro:Lipoamide_DH	UniProt:M4EXK3	PFAM:PF02852	PFAM:PF07992	PIRSF:PIRSF000350
PRINTS:PR00368	PRINTS:PR00411	ScanProsite:PS00076	PANTHER:PTHR22912	PANTHER:PTHR22912:SF196	InterPro:Pyr_OxRdtase_I_AS
InterPro:Pyr_nuc-diS_OxRdtase	InterPro:Pyr_nucl-diS_OxRdtase_dimer	SUPFAM:SSF51905	SUPFAM:SSF55424	TIGRFAMs:TIGR01350	UniParc:UPI00025448B2
SEG:seg	:	:	:	:	:

Description

AT4G16155 (E=4e-278) | dihydrolipoyl dehydrogenase

Coordinates

chrA01:+:11246818..11249961

Molecular Weight (calculated)

59900.1 Da

IEP (calculated)

8.107

GRAVY (calculated)

-0.043

Length

563 amino acids

Sequence
(BLAST)

001: MQSAFSLSFS QSSLTLPNRP LCSPNAAPRN LRFCGLRREA FGFSPPKQLN SCRFQVKNRR IEVSAAAGGN GAPSNKSFDY DLVIIGAGVG GHGAALHAVE
101: KGLKTAIIEG DVVGGTCVNR GCVPSKALLA VSGRMRELQN EHHMKSFGLQ VSAAGYDRQG VADHASNLAT KIRNNLTNSM KALGVDILTG FGSVLGPQKV
201: KYGKDNVITA KDIIIATGSV PFVPKGIEVD GKTVITSDHA LKLESVPDWI AIVGSGYIGL EFSDVYTALG SEVTFIEALD QLMPGFDPEI SKLAQRVLIN
301: PRKIDYHTGV FASKITPAKD GRPVMIELID AKTKEHKDTL EVDAALIATG RAPFTNGLGL ENINVATQRG FIPVDERMRV IDGNGKLVPN LYCIGDANGK
401: LMLAHAASAQ GISVVEQVTG RDHVLNHLSI PAACFTHPEI SMVGLTEPQA REKAEKEGFK VSIAKTSFKA NTKALAENEG EGLAKMIYRP DNGEILGVHI
501: FGLHAADLIH EASNAIALGT RIQDIKLAVH AHPTLSEVVD ELFKAAKVES PASTTPQSVK AAV

Best Arabidopsis Sequence Match ( AT4G16155.1 )
(BLAST)

001: MQSVLSLSFS QASLPLANRT LCSSNAAPST PRNLRFCGLR REAFCFSPSK QLTSCRFHIQ SRRIEVSAAA SSSAGNGAPS KSFDYDLIII GAGVGGHGAA
101: LHAVEKGLKT AIIEGDVVGG TCVNRGCVPS KALLAVSGRM RELQNEHHMK AFGLQVSAAG YDRQGVADHA SNLATKIRNN LTNSMKALGV DILTGFGAVL
201: GPQKVKYGDN IITGKDIIIA TGSVPFVPKG IEVDGKTVIT SDHALKLESV PDWIAIVGSG YIGLEFSDVY TALGSEVTFI EALDQLMPGF DPEISKLAQR
301: VLINTRKIDY HTGVFASKIT PAKDGKPVLI ELIDAKTKEP KDTLEVDAAL IATGRAPFTN GLGLENINVT TQRGFIPVDE RMRVIDGNGK LVPHLYCIGD
401: ANGKLMLAHA ASAQGISVVE QVTGRDHVLN HLSIPAACFT HPEISMVGLT EPQAREKAEK EGFKVSIAKT SFKANTKALA ENEGEGLAKM IYRPDNGEIL
501: GVHIFGLHAA DLIHEASNAI ALGTRIQDIK LAVHAHPTLS EVVDELFKAA KVDSPASVTA QSVKVTV

Arabidopsis Description

LPD2Dihydrolipoyl dehydrogenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4JLP5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.