Factsheet for Solyc01g100360.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
extracellular: 22364583
plastid: 22908117
unclear: 26455813
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007182	Potato	extracellular	99.47	99.47
CDY34436	Canola	plastid	81.75	85.04
CDY32221	Canola	plastid	81.75	84.88
Bra033540.1-P	Field mustard	plastid	82.98	84.01
AT4G16155.1	Thale cress	plastid	82.28	82.72
Solyc05g053100.2.1	Tomato	nucleus	79.12	78.98
VIT_14s0060g01330.t01	Wine grape	plastid	79.47	77.04
CDX82387	Canola	plastid	81.23	74.92
Bra001645.1-P	Field mustard	plastid	81.23	74.92
CDX75895	Canola	plastid	81.05	74.88
AT3G16950.2	Thale cress	plastid	81.58	74.64
VIT_14s0060g01410.t01	Wine grape	cytosol	31.23	73.55
Bra012738.1-P	Field mustard	peroxisome	23.51	64.42
CDY09711	Canola	plasma membrane	42.63	64.12
CDX90541	Canola	extracellular, nucleus, peroxisome	23.16	63.46
Solyc05g053300.2.1	Tomato	extracellular, mitochondrion, nucleus, plastid, unclear	31.05	35.4
Solyc12g099100.1.1	Tomato	plastid	30.53	34.52
Solyc09g065900.2.1	Tomato	plastid	26.84	27.47
Solyc09g091840.2.1	Tomato	extracellular	21.4	26.87
CDX93023	Canola	cytosol, mitochondrion	2.46	20.59

Protein Annotations

Gene3D:3.30.390.30	Gene3D:3.50.50.60	MapMan:5.1.2.2.3	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	InterPro:FAD/NAD-linked_Rdtase_dimer_sf
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0016491
GO:GO:0016668	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0050660	GO:GO:0055114
InterPro:IPR016156	InterPro:IPR036188	UniProt:K4B170	PFAM:PF02852	PFAM:PF07992	PIRSF:PIRSF000350
PRINTS:PR00368	PRINTS:PR00411	ScanProsite:PS00076	PANTHER:PTHR22912	PANTHER:PTHR22912:SF196	InterPro:Pyr_OxRdtase_I_AS
InterPro:Pyr_nuc-diS_OxRdtase	InterPro:Pyr_nucl-diS_OxRdtase_dimer	SUPFAM:SSF51905	SUPFAM:SSF55424	EnsemblPlantsGene:Solyc01g100360.2	EnsemblPlants:Solyc01g100360.2.1
UniParc:UPI0002767517	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:-:90416685..90423981

Molecular Weight (calculated)

60204.4 Da

IEP (calculated)

7.301

GRAVY (calculated)

0.023

Length

570 amino acids

Sequence
(BLAST)

001: MQSSISLSLS SPSTICRSDS SAAVSNVNVN LLNPRSLRFC GLRREAFGLN SSLSTHRIQS LSNATRRPCS NRIVASSAGN GAASKGFDYD LVIIGAGVGG
101: HGAALHAVEK GLKTAIIEGD VVGGTCVNRG CVPSKALLAV SGRMRELQNE HHMKSFGLQV AAAGYDRQGV ADHANNLASK IRSNLTNSMK SLGVDILTGF
201: GTVLGPQKVK YGDTVITAKD IIIATGSVPL VPKGIEVDGK TVITSDHALK LEFVPQWIAI VGSGYIGLEF SDVYTALGSE VTFVEALDQL MPGFDPEIGK
301: LAQRVLINPR KIDYHTGVFA SKITPAKDGK PVTIELIDAK TKELKDTLEV DAALIATGRA PFTQGLGLEN INVQTQRGFV PVDSRMRVID ASGELVPHLY
401: CIGDANGKMM LAHAASAQGI SVVEQVTGKD HVLNHLSIPA ACFTHPEISM VGLTEPQARE KAEKEGFEIG IAKTSFKANT KALAENEGEG LAKLIYRPDS
501: GEILGVHIFG MHAADLIHEA SNAIALGTRI QDIKYAVHAH PTLSEVIDEL FKAAKVKANT SSPAAEPVAA

Best Arabidopsis Sequence Match ( AT4G16155.1 )
(BLAST)

001: MQSVLSLSFS QASLPLANRT LCSSNAAPST PRNLRFCGLR REAFCFSPSK QLTSCRFHIQ SRRIEVSAAA SSSAGNGAPS KSFDYDLIII GAGVGGHGAA
101: LHAVEKGLKT AIIEGDVVGG TCVNRGCVPS KALLAVSGRM RELQNEHHMK AFGLQVSAAG YDRQGVADHA SNLATKIRNN LTNSMKALGV DILTGFGAVL
201: GPQKVKYGDN IITGKDIIIA TGSVPFVPKG IEVDGKTVIT SDHALKLESV PDWIAIVGSG YIGLEFSDVY TALGSEVTFI EALDQLMPGF DPEISKLAQR
301: VLINTRKIDY HTGVFASKIT PAKDGKPVLI ELIDAKTKEP KDTLEVDAAL IATGRAPFTN GLGLENINVT TQRGFIPVDE RMRVIDGNGK LVPHLYCIGD
401: ANGKLMLAHA ASAQGISVVE QVTGRDHVLN HLSIPAACFT HPEISMVGLT EPQAREKAEK EGFKVSIAKT SFKANTKALA ENEGEGLAKM IYRPDNGEIL
501: GVHIFGLHAA DLIHEASNAI ALGTRIQDIK LAVHAHPTLS EVVDELFKAA KVDSPASVTA QSVKVTV

Arabidopsis Description

LPD2Dihydrolipoyl dehydrogenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4JLP5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.