CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY21581

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54660.1	CDY21581	AT5G09420.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73461	Canola	plastid	84.05	90.2
CDY69892	Canola	plastid	83.55	89.5
AT3G54660.1	Thale cress	plastid	82.39	87.79
CDX76141	Canola	plastid	87.04	86.61
CDX93023	Canola	cytosol, mitochondrion	9.14	80.88
CDX94793	Canola	endoplasmic reticulum	21.26	76.65
VIT_07s0141g00390.t01	Wine grape	plastid	71.1	76.57
Solyc09g065900.2.1	Tomato	plastid	68.77	74.33
KRH32102	Soybean	plastid	67.28	74.31
KRH71329	Soybean	plastid	67.11	74.13
PGSC0003DMT400019491	Potato	cytosol, extracellular, plastid	68.44	74.1
TraesCS4B01G278900.1	Wheat	plastid	65.45	71.64
TraesCS4D01G277400.1	Wheat	golgi	65.45	71.38
TraesCS4A01G025200.1	Wheat	golgi	64.95	71.09
Os03t0163300-01	Rice	plastid	65.12	70.63
GSMUA_Achr3P29340_001	Banana	plastid	65.45	70.48
Zm00001d027769_P001	Maize	plastid	64.12	70.18
EER95455	Sorghum	plastid	63.95	70.0
HORVU4Hr1G073930.1	Barley	mitochondrion, plastid	64.62	65.93
Os10t0415300-02	Rice	plastid	60.47	65.7
OQU91783	Sorghum	plastid	56.31	63.84
KRH71332	Soybean	cytosol	13.12	63.71
GSMUA_Achr9P21540_001	Banana	cytosol	14.45	54.38
CDX85155	Canola	cytosol	40.53	50.41
CDX77463	Canola	cytosol	40.37	50.0
CDX92998	Canola	cytosol	40.03	49.79
CDX94838	Canola	cytosol	41.53	47.26
CDX90541	Canola	extracellular, nucleus, peroxisome	10.13	29.33
CDY34436	Canola	plastid	24.92	27.37
CDY32221	Canola	plastid	24.42	26.78
CDX92121	Canola	mitochondrion	21.59	25.79
CDX93639	Canola	mitochondrion	21.59	25.64
CDY20935	Canola	mitochondrion	21.59	25.64
CDX95864	Canola	mitochondrion	21.43	25.49
CDX75895	Canola	plastid	25.42	24.8
CDX82387	Canola	plastid	25.25	24.6
CDY09711	Canola	plasma membrane	11.79	18.73

Protein Annotations

KEGG:00480+1.8.1.7	MapMan:10.4.1.4	Gene3D:3.30.390.30	Gene3D:3.50.50.60	GO:A0A078FJP3	UniProt:A0A078FJP3
EnsemblPlants:CDY13217	ProteinID:CDY13217	ProteinID:CDY13217.1	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	InterPro:FAD/NAD-linked_Rdtase_dimer_sf
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004362	GO:GO:0005488	GO:GO:0005575
GO:GO:0005623	GO:GO:0006749	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0016668	GO:GO:0019725	GO:GO:0045454	GO:GO:0050660	GO:GO:0050661	GO:GO:0055114
GO:GO:0098869	EnsemblPlantsGene:GSBRNA2T00071116001	InterPro:Glut-diS_reduct	InterPro:IPR016156	InterPro:IPR036188	PFAM:PF02852
PFAM:PF07992	PRINTS:PR00368	PRINTS:PR00411	ScanProsite:PS00076	PANTHER:PTHR43256	PANTHER:PTHR43256:SF4
MetaCyc:PWY-4081	InterPro:Pyr_OxRdtase_I_AS	InterPro:Pyr_nucl-diS_OxRdtase_dimer	SUPFAM:SSF51905	SUPFAM:SSF55424	TIGRFAMs:TIGR01424
UniParc:UPI0004EF44BB	SEG:seg	:	:	:	:

Description

BnaC04g26180DBnaC04g26180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FJP3]

Coordinates

chrLK032032:-:593891..597463

Molecular Weight (calculated)

65549.4 Da

IEP (calculated)

8.025

GRAVY (calculated)

-0.203

Length

602 amino acids

Sequence
(BLAST)

001: MATTPKLTTT LSSSPSLQTL CRKLPISTHL PSSSSSSSIS RYLSSLRPRL TLLSNHRYNP SRRFSLRAQN DNGTDSDLRY DFALFTIGAG SGGVRASRFA
101: TSFGASAAVC ELPFSTISSD TAGGVGGTCV LRGCVPKKLL VYASKYTHEF EDSHGFGWKY DTDPSHDWRT LIANKNAELQ LLTGIYKNIL NNANVKLIEG
201: RGKVIDPHTV DVDGRIYTTR NILIAVGGRP FIPDIPGREF AIDSDAALDL PSMPKKIAIV GGGYIALEFA GIFNGLNSEV HVFIRQKKVL RGFDEDVRDF
301: VGEQMSLRGI EFHTEESPEA IMKSGDGSLS LKTSKGTVDG FSHVMFATGR KPNTKNLGLE NVGVKLAKNG AIEVDEYSRT SVPSIWAVGD VTDRINLTPV
401: ALMEGGALAK TLFQNEPTKP DHRAVPCAVF SQPPIGTVGL TEEQAREQYG DIDVFTSNFK PLKATLSGLP DRVFMKLIVC ANTDKVLGVH MCGDDSPEII
501: QGFGVAVKAG LTKADFDATV GVHPTAAEEF VTMRTPTRKI RKGSSEMGVP YFISGERQVL RLKQLQGSRE GCKIRLDFTP LELPDKESIH QEPTFLSMEI
601: LY

Best Arabidopsis Sequence Match ( AT3G54660.1 )
(BLAST)

001: MASTPKLTST ISSSSPSLQF LCKKLPIAIH LPSSSSSSFL SLPKTLTSLY SLRPRIALLS NHRYYHSRRF SVCASTDNGA ESDRHYDFDL FTIGAGSGGV
101: RASRFATSFG ASAAVCELPF STISSDTAGG VGGTCVLRGC VPKKLLVYAS KYSHEFEDSH GFGWKYETEP SHDWTTLIAN KNAELQRLTG IYKNILSKAN
201: VKLIEGRGKV IDPHTVDVDG KIYTTRNILI AVGGRPFIPD IPGKEFAIDS DAALDLPSKP KKIAIVGGGY IALEFAGIFN GLNCEVHVFI RQKKVLRGFD
301: EDVRDFVGEQ MSLRGIEFHT EESPEAIIKA GDGSFSLKTS KGTVEGFSHV MFATGRKPNT KNLGLENVGV KMAKNGAIEV DEYSQTSVPS IWAVGDVTDR
401: INLTPVALME GGALAKTLFQ NEPTKPDYRA VPCAVFSQPP IGTVGLTEEQ AIEQYGDVDV YTSNFRPLKA TLSGLPDRVF MKLIVCANTN KVLGVHMCGE
501: DSPEIIQGFG VAVKAGLTKA DFDATVGVHP TAAEEFVTMR APTRKFRKDS SEGKASPEAK TAAGV

Arabidopsis Description

EMB2360At3g54660 [Source:UniProtKB/TrEMBL;Acc:Q5FV38]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.