Factsheet for PGSC0003DMT400057721

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400034833
PGSC0003DMT400042062

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G21470.1	PGSC0003DMT400034833	AT4G14640.1	17360592
AT4G21470.1	PGSC0003DMT400042062	AT4G14640.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41925	Soybean	cytosol	56.2	79.79
Solyc02g079100.2.1	Tomato	extracellular	97.08	69.09
KRH49951	Soybean	nucleus	78.1	56.76
AT4G21470.1	Thale cress	cytosol	75.55	54.62
CDX79065	Canola	cytosol	75.18	54.35
GSMUA_Achr5P20490_001	Banana	cytosol	76.28	53.87
VIT_00s0181g00130.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	76.28	53.87
CDX82826	Canola	cytosol	74.09	53.56
VIT_00s0181g00140.t01	Wine grape	mitochondrion, plastid	77.37	52.74
TraesCS1A01G146600.1	Wheat	cytosol	74.45	51.39
TraesCS1D01G144800.1	Wheat	cytosol	73.72	50.88
TraesCS1B01G164900.1	Wheat	cytosol	73.72	50.88
GSMUA_Achr1P03460_001	Banana	cytosol, nucleus, plasma membrane	70.8	50.79
Os10t0464400-01	Rice	cytosol	72.99	50.38
EER92955	Sorghum	plastid	72.63	50.25
OQU91676	Sorghum	cytosol, nucleus, plastid	71.53	49.87
HORVU1Hr1G038850.2	Barley	plastid	74.82	42.01
Zm00001d037045_P004	Maize	cytosol	71.9	29.67
PGSC0003DMT400052621	Potato	cytosol	35.77	25.59
PGSC0003DMT400062819	Potato	mitochondrion	14.96	19.52
Os10t0209300-00	Rice	cytosol	0.36	1.16

Protein Annotations

KEGG:00740+2.7.1.26	Gene3D:2.40.30.30	Gene3D:3.40.50.1000	MapMan:7.10.8	GO:GO:0000287	GO:GO:0003674
GO:GO:0003824	GO:GO:0003919	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0008531
GO:GO:0009058	GO:GO:0009231	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740
GO:GO:0016787	InterPro:HAD-SF_hydro_IA	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023214	InterPro:IPR023465
UniProt:M1C1J2	PFAM:PF01687	PFAM:PF13419	EnsemblPlantsGene:PGSC0003DMG400022409	PGSC:PGSC0003DMG400022409	EnsemblPlants:PGSC0003DMT400057721
PANTHER:PTHR22749	PANTHER:PTHR22749:SF1	InterPro:Riboflavin_kinase	InterPro:Riboflavin_kinase_bac/euk	InterPro:Riboflavin_kinase_dom_sf	SMART:SM00904
SUPFAM:SSF56784	SUPFAM:SSF82114	TIGRFAMs:TIGR01509	UniParc:UPI0002948B58	SEG:seg	:

Description

Riboflavin kinase/fmn adenylyltransferase [Source:PGSC_GENE;Acc:PGSC0003DMG400022409]

Coordinates

chr2:+:34806846..34809697

Molecular Weight (calculated)

30060.8 Da

IEP (calculated)

5.037

GRAVY (calculated)

-0.116

Length

274 amino acids

Sequence
(BLAST)

001: MALASNSSRS NIEAKIFHHA GWKESFSAIV GGDEVKAGKP SPEIFLEAAK RLNMDPSSFL VIEDSIPGVT AGKAAGMAVV AVPSLAKQSH LYTSADEVIN
101: SLLDLQLEKW GLPAFQDRIE GTLPLEPWCI GGPVIKGFGR GSKVLGIPTA NLSPEGYSAI LSEHPAGVYF GWAGLSGRGV YKMVMSIGWN PFFNNTEKTI
201: EPWLLHDFNE DFYGEELHLV VVGYIRPEAT FSSLEALIAK IHEDRKIAER ALELPQYLKY KDDPYLESSL HQEN

Best Arabidopsis Sequence Match ( AT4G21470.1 )
(BLAST)

001: MSMSNSLKKL SSCVLIDLDG TLINTDGVVG DILRKYLCKY GKQWDGRESL KIVGKTPVEA ATTIVEDYEL PCKVDEFNSE FYPLFSAQMD KIKSLPGANR
101: LIRHLKCHGV PVALASNSSR ANIESKISYH EGWKECFSVI VGSDEVSKGK PSPDIFLEAA KRLKKDPADC LVIEDSVPGV MAGKAAGTKV IAVPSLPKQT
201: HLYTSADEVI NSLLDIRLEK WGLPPFQDWI ENTLPIDPWH IGGPVIKGFG RGSKVLGIPT ANLSTKDYAD ELVEHPSGVY FGWAGLAKRG VFKMVMSIGW
301: NPYFNNKEKT IEPWLLHDFT EDFYGEELRL IIVGYIRPEA NFSSLESLIA KIHEDREVAE KALDLPSYAK FKGDPYLTK

Arabidopsis Description

FHYFMN/FHY [Source:UniProtKB/TrEMBL;Acc:A0A178V341]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.