Factsheet for TraesCS1D01G144800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G382800.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G21470.1	TraesCS5A01G382800.2	AT4G14640.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G146600.1	Wheat	cytosol	98.99	98.99
TraesCS1B01G164900.1	Wheat	cytosol	98.74	98.74
Os10t0209300-00	Rice	cytosol	18.64	86.05
Os10t0464400-01	Rice	cytosol	85.14	85.14
EER92955	Sorghum	plastid	83.88	84.09
OQU91676	Sorghum	cytosol, nucleus, plastid	81.61	82.44
HORVU1Hr1G038850.2	Barley	plastid	95.47	77.66
GSMUA_Achr5P20490_001	Banana	cytosol	72.8	74.48
PGSC0003DMT400057721	Potato	cytosol	50.88	73.72
GSMUA_Achr1P03460_001	Banana	cytosol, nucleus, plasma membrane	70.53	73.3
KRH41925	Soybean	cytosol	35.52	73.06
VIT_00s0181g00130.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	70.78	72.42
VIT_00s0181g00140.t01	Wine grape	mitochondrion, plastid	71.03	70.15
Solyc02g079100.2.1	Tomato	extracellular	68.01	70.13
CDX79065	Canola	cytosol	66.25	69.39
AT4G21470.1	Thale cress	cytosol	66.0	69.13
KRH49951	Soybean	nucleus	65.49	68.97
CDX82826	Canola	cytosol	65.24	68.34
Zm00001d037045_P004	Maize	cytosol	84.13	50.3
TraesCS3D01G294900.3	Wheat	cytosol	37.53	38.21
TraesCS3D01G503200.1	Wheat	cytosol	19.9	32.38
TraesCS7D01G118300.1	Wheat	cytosol	19.65	31.84

Protein Annotations

KEGG:00740+2.7.1.26	Gene3D:1.10.150.240	Gene3D:2.40.30.30	Gene3D:3.40.50.1000	MapMan:7.10.8	GO:GO:0000287
GO:GO:0003674	GO:GO:0003824	GO:GO:0003919	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0008531	GO:GO:0009058	GO:GO:0009231	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740
GO:GO:0016787	InterPro:HAD-SF_hydro_IA	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023198	InterPro:IPR023214
InterPro:IPR023465	PFAM:PF01687	PFAM:PF13419	InterPro:PGP-like_dom2	PRINTS:PR00413	PANTHER:PTHR22749
PANTHER:PTHR22749:SF1	InterPro:Riboflavin_kinase	InterPro:Riboflavin_kinase_bac/euk	InterPro:Riboflavin_kinase_dom_sf	SMART:SM00904	SUPFAM:SSF56784
SUPFAM:SSF82114	TIGRFAMs:TIGR01509	EnsemblPlantsGene:TraesCS1D01G144800	EnsemblPlants:TraesCS1D01G144800.1	:	:

Description

No Description!

Coordinates

chr1D:-:199923888..199927763

Molecular Weight (calculated)

43787.1 Da

IEP (calculated)

4.912

GRAVY (calculated)

-0.219

Length

397 amino acids

Sequence
(BLAST)

001: MAAPKPITRL ISHVILDLDG TLLNTDCIVS QVLKPFIVKN GKKWDSKKAH KFVGKTPYEA AAVVLEDYGL PYSTEEFLSL INPMFSEQWG NIKALPGANR
101: LIKHLKSSRV PAALASNSSR SNIESKISCQ QGWKEYFSAI VGADEVESGK PSPDIFLEAA KRMNADPSNC LVIEDSVPGV TAGKAAGMHV IAVPSVPKRT
201: DEFSSADEII NSLLDLRPEK WGLPPFNDWI EGTLPIDPWF IGGPVIKGFG RGSKVLGIPT ANLAAENFSD ILSDHTSGVY FGWAGLSKRG IYKMVMSIGW
301: NPYFDNTEKT IEPWLLHGFD EDFYGEELRL VIVGYIRPEA NFPSLESLIE RIHEDGRIAE NALDLPEYAK YKESPYLRNP LQEGAATGGN EAEQEFI

Best Arabidopsis Sequence Match ( AT4G21470.1 )
(BLAST)

001: MSMSNSLKKL SSCVLIDLDG TLINTDGVVG DILRKYLCKY GKQWDGRESL KIVGKTPVEA ATTIVEDYEL PCKVDEFNSE FYPLFSAQMD KIKSLPGANR
101: LIRHLKCHGV PVALASNSSR ANIESKISYH EGWKECFSVI VGSDEVSKGK PSPDIFLEAA KRLKKDPADC LVIEDSVPGV MAGKAAGTKV IAVPSLPKQT
201: HLYTSADEVI NSLLDIRLEK WGLPPFQDWI ENTLPIDPWH IGGPVIKGFG RGSKVLGIPT ANLSTKDYAD ELVEHPSGVY FGWAGLAKRG VFKMVMSIGW
301: NPYFNNKEKT IEPWLLHDFT EDFYGEELRL IIVGYIRPEA NFSSLESLIA KIHEDREVAE KALDLPSYAK FKGDPYLTK

Arabidopsis Description

FHYFMN/FHY [Source:UniProtKB/TrEMBL;Acc:A0A178V341]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.