Factsheet for GSMUA_Achr5P20490_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P04700_001
GSMUA_Achr1P14070_001
GSMUA_Achr1P27230_001
GSMUA_Achr2P12680_001
GSMUA_Achr3P25390_001
GSMUA_Achr4P22570_001
GSMUA_Achr5P09010_001
GSMUA_Achr6P24410_001
GSMUA_Achr7P01390_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G21470.1	GSMUA_Achr1P04700_001	AT4G14640.1	17360592
AT4G21470.1	GSMUA_Achr1P14070_001	AT4G14640.1	17360592
AT4G21470.1	GSMUA_Achr1P27230_001	AT4G14640.1	17360592
AT4G21470.1	GSMUA_Achr2P12680_001	AT4G14640.1	17360592
AT4G21470.1	GSMUA_Achr3P25390_001	AT4G14640.1	17360592
AT4G21470.1	GSMUA_Achr4P22570_001	AT4G14640.1	17360592
AT4G21470.1	GSMUA_Achr5P09010_001	AT4G14640.1	17360592
AT4G21470.1	GSMUA_Achr6P24410_001	AT4G14640.1	17360592
AT4G21470.1	GSMUA_Achr7P01390_001	AT4G14640.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P03460_001	Banana	cytosol, nucleus, plasma membrane	76.29	77.49
PGSC0003DMT400057721	Potato	cytosol	53.87	76.28
KRH41925	Soybean	cytosol	37.63	75.65
Os10t0464400-01	Rice	cytosol	76.55	74.81
EER92955	Sorghum	plastid	76.03	74.49
OQU91676	Sorghum	cytosol, nucleus, plastid	74.74	73.79
VIT_00s0181g00130.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	73.2	73.2
TraesCS1A01G146600.1	Wheat	cytosol	74.74	73.05
TraesCS1D01G144800.1	Wheat	cytosol	74.48	72.8
TraesCS1B01G164900.1	Wheat	cytosol	74.48	72.8
Solyc02g079100.2.1	Tomato	extracellular	71.39	71.95
KRH49951	Soybean	nucleus	69.85	71.88
VIT_00s0181g00140.t01	Wine grape	mitochondrion, plastid	73.2	70.65
CDX79065	Canola	cytosol	67.01	68.6
CDX82826	Canola	cytosol	66.49	68.07
AT4G21470.1	Thale cress	cytosol	65.72	67.28
HORVU1Hr1G038850.2	Barley	plastid	75.26	59.84
Os10t0209300-00	Rice	cytosol	11.08	50.0
GSMUA_Achr4P10550_001	Banana	cytosol	43.04	43.72
Zm00001d037045_P004	Maize	cytosol	74.74	43.67
GSMUA_Achr9P22850_001	Banana	mitochondrion	19.59	31.8

Protein Annotations

KEGG:00740+2.7.1.26	Gene3D:1.10.150.240	Gene3D:2.40.30.30	Gene3D:3.40.50.1000	MapMan:7.10.8	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0008531	GO:GO:0009058	GO:GO:0009231
GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr5G20490_001
EnsemblPlants:GSMUA_Achr5P20490_001	EnsemblPlants:GSMUA_Achr5T20490_001	InterPro:HAD-SF_hydro_IA	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023198
InterPro:IPR023214	InterPro:IPR023465	UniProt:M0T078	PFAM:PF01687	PFAM:PF13419	InterPro:PGP-like_dom2
PRINTS:PR00413	PANTHER:PTHR22749	PANTHER:PTHR22749:SF1	InterPro:Riboflavin_kinase	InterPro:Riboflavin_kinase_bac/euk	InterPro:Riboflavin_kinase_dom_sf
SMART:SM00904	SUPFAM:SSF56784	SUPFAM:SSF82114	TIGRFAMs:TIGR01509	UniParc:UPI000295116B	SEG:seg

Description

Riboflavin kinase [Source:GMGC_GENE;Acc:GSMUA_Achr5G20490_001]

Coordinates

chr5:+:22268410..22276129

Molecular Weight (calculated)

42515.3 Da

IEP (calculated)

6.427

GRAVY (calculated)

-0.014

Length

388 amino acids

Sequence
(BLAST)

001: MAATKHFPQM VSHVILDLDG TLLNTDGVMN EVLKVFLVKY GKRWDNKISQ KIIGRTPLEV ATAVVKDFSL SLTTEELMSA ISPMFSDQWC NIKALPGANR
101: LIKHLRSNGV TMALASNSSK SCIEAKISFH QGWKESFSVI IGGDEVTTGK PSPEIFLEAA KRMNVDISNC LVIEDSLPGV AAGKAAGMAV VAVPSLPKQA
201: GLYSSADVVI NSLLDLHPEK WGLPPFEDWI EGTLPIEPWY IGGPVIKGFG RGSKVLGIPT ANLPAENFST ILSEHTSGVY FGWAGLSTRG IYKMVMSIGW
301: NPYFDNTEKT IEPWLLHDFG EDFYGEELRL AIVGYIRPEA NFPSLESLIA RIHEDGRIAK KALDLPIYAG SKDSPYLKNS MLRSNCHS

Best Arabidopsis Sequence Match ( AT4G21470.1 )
(BLAST)

001: MSMSNSLKKL SSCVLIDLDG TLINTDGVVG DILRKYLCKY GKQWDGRESL KIVGKTPVEA ATTIVEDYEL PCKVDEFNSE FYPLFSAQMD KIKSLPGANR
101: LIRHLKCHGV PVALASNSSR ANIESKISYH EGWKECFSVI VGSDEVSKGK PSPDIFLEAA KRLKKDPADC LVIEDSVPGV MAGKAAGTKV IAVPSLPKQT
201: HLYTSADEVI NSLLDIRLEK WGLPPFQDWI ENTLPIDPWH IGGPVIKGFG RGSKVLGIPT ANLSTKDYAD ELVEHPSGVY FGWAGLAKRG VFKMVMSIGW
301: NPYFNNKEKT IEPWLLHDFT EDFYGEELRL IIVGYIRPEA NFSSLESLIA KIHEDREVAE KALDLPSYAK FKGDPYLTK

Arabidopsis Description

FHYFMN/FHY [Source:UniProtKB/TrEMBL;Acc:A0A178V341]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.