CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG37587
KXG37588

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G21470.1	KXG37587	AT4G14640.1	17360592
AT4G21470.1	KXG37588	AT4G14640.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92955	Sorghum	plastid	88.3	87.63
Os10t0464400-01	Rice	cytosol	85.24	84.38
TraesCS1A01G146600.1	Wheat	cytosol	82.7	81.86
TraesCS1D01G144800.1	Wheat	cytosol	82.44	81.61
TraesCS1B01G164900.1	Wheat	cytosol	82.44	81.61
Os10t0209300-00	Rice	cytosol	16.54	75.58
GSMUA_Achr5P20490_001	Banana	cytosol	73.79	74.74
PGSC0003DMT400057721	Potato	cytosol	49.87	71.53
GSMUA_Achr1P03460_001	Banana	cytosol, nucleus, plasma membrane	69.47	71.47
VIT_00s0181g00130.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	69.72	70.62
KRH41925	Soybean	cytosol	33.84	68.91
VIT_00s0181g00140.t01	Wine grape	mitochondrion, plastid	69.97	68.41
Solyc02g079100.2.1	Tomato	extracellular	66.92	68.31
KRH49951	Soybean	nucleus	65.14	67.9
CDX79065	Canola	cytosol	64.89	67.28
AT4G21470.1	Thale cress	cytosol	63.87	66.23
CDX82826	Canola	cytosol	63.87	66.23
HORVU1Hr1G038850.2	Barley	plastid	82.19	66.19
Zm00001d037045_P004	Maize	cytosol	88.8	52.56
EES03641	Sorghum	cytosol	37.4	39.95
EES13604	Sorghum	cytosol	19.34	31.15
KXG24804	Sorghum	plastid	19.59	26.28

Protein Annotations

KEGG:00740+2.7.1.26	Gene3D:1.10.150.240	Gene3D:2.40.30.30	Gene3D:3.40.50.1000	MapMan:7.10.8	UniProt:A0A1Z5S790
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0008531	GO:GO:0009058
GO:GO:0009231	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0016787
InterPro:HAD-SF_hydro_IA	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023198	InterPro:IPR023214	InterPro:IPR023465
EnsemblPlants:OQU91676	ProteinID:OQU91676	ProteinID:OQU91676.1	PFAM:PF01687	PFAM:PF13419	InterPro:PGP-like_dom2
PANTHER:PTHR22749	PANTHER:PTHR22749:SF1	InterPro:Riboflavin_kinase	InterPro:Riboflavin_kinase_bac/euk	InterPro:Riboflavin_kinase_dom_sf	SMART:SM00904
EnsemblPlantsGene:SORBI_3001G227200	SUPFAM:SSF56784	SUPFAM:SSF82114	TIGRFAMs:TIGR01509	UniParc:UPI000B8BAD04	:

Description

hypothetical protein

Coordinates

chr1:+:21790110..21794697

Molecular Weight (calculated)

43253.6 Da

IEP (calculated)

5.172

GRAVY (calculated)

-0.192

Length

393 amino acids

Sequence
(BLAST)

001: MPISRLVSHV ILDLDGTLLN TDSVVSKVVK PFLVKNGKTW DSKKAYKVVG KTPYEAAAIV LEDYGLPYST EEFLSMITPV FSEQWCNIKA LPGATRLLKH
101: LRSNGVPTAL ASNSPRSNIE AKISCHQGWK ESFSAIVGGD EVEKGKPSPD IFLEAAKRMN ATPSNCLVIE DSLPGITAGK AAGMHVIAVP SIPKKTAEFS
201: SADVVINSLL DVRPEKWGLP PFNDWIEDTL PIEPWFISGP VIKGFGRGSK VLGIPTANLP AENFSDVVSE YTSGVYFGWA GLSTRGTYKM VMSVGWNPYF
301: DNTEKTVEPW LLHNFGEDFY GEELRLAIVG YIRPEANFPS LESLIERIQE DGRIAEKALD LPMYAKYKDS PYLRNTLQLG STNDDSQAEL NSK

Best Arabidopsis Sequence Match ( AT4G21470.1 )
(BLAST)

001: MSMSNSLKKL SSCVLIDLDG TLINTDGVVG DILRKYLCKY GKQWDGRESL KIVGKTPVEA ATTIVEDYEL PCKVDEFNSE FYPLFSAQMD KIKSLPGANR
101: LIRHLKCHGV PVALASNSSR ANIESKISYH EGWKECFSVI VGSDEVSKGK PSPDIFLEAA KRLKKDPADC LVIEDSVPGV MAGKAAGTKV IAVPSLPKQT
201: HLYTSADEVI NSLLDIRLEK WGLPPFQDWI ENTLPIDPWH IGGPVIKGFG RGSKVLGIPT ANLSTKDYAD ELVEHPSGVY FGWAGLAKRG VFKMVMSIGW
301: NPYFNNKEKT IEPWLLHDFT EDFYGEELRL IIVGYIRPEA NFSSLESLIA KIHEDREVAE KALDLPSYAK FKGDPYLTK

Arabidopsis Description

FHYFMN/FHY [Source:UniProtKB/TrEMBL;Acc:A0A178V341]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.