Factsheet for Solyc02g079100.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 3
plastid 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

extracellular: 22364583

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g005240.1.1
Solyc06g053930.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G21470.1	Solyc03g005240.1.1	AT4G14640.1	17360592
AT4G21470.1	Solyc06g053930.2.1	AT4G14640.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400057721	Potato	cytosol	69.09	97.08
KRH41925	Soybean	cytosol	40.26	80.31
KRH49951	Soybean	nucleus	74.81	76.39
VIT_00s0181g00130.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	74.81	74.23
CDX79065	Canola	cytosol	72.47	73.61
AT4G21470.1	Thale cress	cytosol	71.69	72.82
CDX82826	Canola	cytosol	71.69	72.82
VIT_00s0181g00140.t01	Wine grape	mitochondrion, plastid	74.81	71.64
GSMUA_Achr5P20490_001	Banana	cytosol	71.95	71.39
TraesCS1A01G146600.1	Wheat	cytosol	70.91	68.77
TraesCS1B01G164900.1	Wheat	cytosol	70.39	68.26
GSMUA_Achr1P03460_001	Banana	cytosol, nucleus, plasma membrane	67.53	68.06
TraesCS1D01G144800.1	Wheat	cytosol	70.13	68.01
EER92955	Sorghum	plastid	69.61	67.68
Os10t0464400-01	Rice	cytosol	69.61	67.51
OQU91676	Sorghum	cytosol, nucleus, plastid	68.31	66.92
Os10t0209300-00	Rice	cytosol	12.99	58.14
HORVU1Hr1G038850.2	Barley	plastid	70.91	55.94
Zm00001d037045_P004	Maize	cytosol	68.31	39.61
Solyc07g053270.2.1	Tomato	cytosol	36.88	37.08
Solyc10g054280.1.1	Tomato	cytosol	20.0	31.3

Protein Annotations

KEGG:00740+2.7.1.26	Gene3D:1.10.150.240	Gene3D:2.40.30.30	Gene3D:3.40.50.1000	MapMan:7.10.8	GO:GO:0000287
GO:GO:0003674	GO:GO:0003824	GO:GO:0003919	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0008531	GO:GO:0009058	GO:GO:0009231	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310
GO:GO:0016740	GO:GO:0016787	InterPro:HAD-SF_hydro_IA	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023198
InterPro:IPR023214	InterPro:IPR023465	UniProt:K4B9D4	PFAM:PF01687	PFAM:PF13419	InterPro:PGP-like_dom2
PANTHER:PTHR22749	PANTHER:PTHR22749:SF1	InterPro:Riboflavin_kinase	InterPro:Riboflavin_kinase_bac/euk	InterPro:Riboflavin_kinase_dom_sf	SMART:SM00904
SUPFAM:SSF56784	SUPFAM:SSF82114	EnsemblPlantsGene:Solyc02g079100.2	EnsemblPlants:Solyc02g079100.2.1	TIGRFAMs:TIGR01509	UniParc:UPI000276869C
SEG:seg	:	:	:	:	:

Description

Bifunctional riboflavin kinase/FMN phosphatase [Source:Projected from Arabidopsis thaliana (AT4G21470) UniProtKB/Swiss-Prot;Acc:Q84MD8]

Coordinates

chr2:+:43717748..43722031

Molecular Weight (calculated)

42377.7 Da

IEP (calculated)

5.972

GRAVY (calculated)

-0.135

Length

385 amino acids

Sequence
(BLAST)

001: MSVERTFKKL VSGVILDLDG TLLNTDGIVS EILKVFLVKY GKQWDGREAP HIVGKTPTEA AAAVVEDYGL PLSRDEFLSQ FYPMLSDQWR NIKALPGANR
101: LINHLSGHGV PMALASNSSK SNIEAKIFHH AGWKESFSAI VGGDEVKAGK PSPEIFLEAA KRLNMDPSSF LVIEDSIPGV TAGKDAGMAV VAVPSLAKQS
201: HLYTSADEVI NSLLDLQLEK WGLPAFQDRI EGTLPLEPWY IGGPVIKGFG RGSKVLGIPT ANLSPQGYSA ILSEHPAGVY FGWAGLSGRG VYKMVMSIGW
301: NPFFNNTEKT VEPWLLHDFN EDFYGEELHL VVVGYIRPEA NFSSLEALIA KIHEDRKIAE RALELPQYLK YKDDPYLKSS LHQQN

Best Arabidopsis Sequence Match ( AT4G21470.1 )
(BLAST)

001: MSMSNSLKKL SSCVLIDLDG TLINTDGVVG DILRKYLCKY GKQWDGRESL KIVGKTPVEA ATTIVEDYEL PCKVDEFNSE FYPLFSAQMD KIKSLPGANR
101: LIRHLKCHGV PVALASNSSR ANIESKISYH EGWKECFSVI VGSDEVSKGK PSPDIFLEAA KRLKKDPADC LVIEDSVPGV MAGKAAGTKV IAVPSLPKQT
201: HLYTSADEVI NSLLDIRLEK WGLPPFQDWI ENTLPIDPWH IGGPVIKGFG RGSKVLGIPT ANLSTKDYAD ELVEHPSGVY FGWAGLAKRG VFKMVMSIGW
301: NPYFNNKEKT IEPWLLHDFT EDFYGEELRL IIVGYIRPEA NFSSLESLIA KIHEDREVAE KALDLPSYAK FKGDPYLTK

Arabidopsis Description

FHYFMN/FHY [Source:UniProtKB/TrEMBL;Acc:A0A178V341]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.