CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY06478

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G21470.1	CDY06478	AT4G14640.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79065	Canola	cytosol	98.15	98.15
AT4G21470.1	Thale cress	cytosol	91.03	91.03
KRH41925	Soybean	cytosol	40.9	80.31
PGSC0003DMT400057721	Potato	cytosol	53.56	74.09
KRH49951	Soybean	nucleus	71.77	72.15
Solyc02g079100.2.1	Tomato	extracellular	72.82	71.69
VIT_00s0181g00130.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	71.24	69.59
VIT_00s0181g00140.t01	Wine grape	mitochondrion, plastid	71.24	67.16
GSMUA_Achr5P20490_001	Banana	cytosol	68.07	66.49
TraesCS1A01G146600.1	Wheat	cytosol	68.87	65.74
TraesCS1B01G164900.1	Wheat	cytosol	68.6	65.49
Os10t0464400-01	Rice	cytosol	68.6	65.49
TraesCS1D01G144800.1	Wheat	cytosol	68.34	65.24
EER92955	Sorghum	plastid	67.02	64.14
GSMUA_Achr1P03460_001	Banana	cytosol, nucleus, plasma membrane	64.64	64.14
OQU91676	Sorghum	cytosol, nucleus, plastid	66.23	63.87
HORVU1Hr1G038850.2	Barley	plastid	68.6	53.28
Os10t0209300-00	Rice	cytosol	11.08	48.84
Zm00001d037045_P004	Maize	cytosol	66.75	38.1
CDY57289	Canola	cytosol	8.71	27.5
CDY38298	Canola	cytosol	16.36	26.05
CDY42776	Canola	mitochondrion	18.21	23.88
CDY42775	Canola	mitochondrion	18.21	23.88
CDX92735	Canola	mitochondrion	18.21	23.63
CDY25908	Canola	cytosol	16.09	21.86

Protein Annotations

KEGG:00740+2.7.1.26	Gene3D:1.10.150.240	Gene3D:2.40.30.30	Gene3D:3.40.50.1000	MapMan:7.10.8	GO:A0A078D0A5
EnsemblPlants:CDX82826	ProteinID:CDX82826	ProteinID:CDX82826.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0008531	GO:GO:0009058	GO:GO:0009231	GO:GO:0009987	GO:GO:0016301
GO:GO:0016740	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00138167001	InterPro:HAD-SF_hydro_IA	InterPro:HAD-like_sf	InterPro:HAD_sf
InterPro:IPR023198	InterPro:IPR023214	InterPro:IPR023465	PFAM:PF01687	PFAM:PF13419	InterPro:PGP-like_dom2
PANTHER:PTHR22749	PANTHER:PTHR22749:SF1	MetaCyc:PWY-5523	MetaCyc:PWY-6168	InterPro:Riboflavin_kinase	InterPro:Riboflavin_kinase_bac/euk
InterPro:Riboflavin_kinase_dom_sf	SMART:SM00904	SUPFAM:SSF56784	SUPFAM:SSF82114	TIGRFAMs:TIGR01509	UniPathway:UPA00276
UniParc:UPI0004EEB236	SEG:seg	:	:	:	:

Description

BnaC01g12760D

Coordinates

chrLK031830:+:571125..573295

Molecular Weight (calculated)

41826.1 Da

IEP (calculated)

5.300

GRAVY (calculated)

-0.182

Length

379 amino acids

Sequence
(BLAST)

001: MSMSNSLKKL SSCVLIDLDG TLINTDGVVS DILRKYLSKY GKQWDGREAL KIVGKTPLEA ATTIVEDYGL PCGVDEFNSE FYPLFSAQMD KIKSLPGANR
101: LIRHLNGHGV PMALASNSSR ANIESKISYH QGWKDCFSVI IGSDEVSKGK PSPDLFLQAA RKLNRDPGEC LVIEDSVPGV LAGKAAGATV IAVPSLPKQT
201: HLYTSADEVI NSLLDLKPEK WGLPPFQDWI ENTLPIDPWR IGGPVIKGFG RGSKVLGIPT ANLSTKDYAE ELVEHPSGVY FGWAGLATRG VFKMVMSIGW
301: NPYFNNTEKT IEPWLLHDFT EDFYGEELCL IIVGYIRPEA NFPSLESLVA KIHEDREVAE KALDLPSYAK FKDDPYLTK

Best Arabidopsis Sequence Match ( AT4G21470.1 )
(BLAST)

001: MSMSNSLKKL SSCVLIDLDG TLINTDGVVG DILRKYLCKY GKQWDGRESL KIVGKTPVEA ATTIVEDYEL PCKVDEFNSE FYPLFSAQMD KIKSLPGANR
101: LIRHLKCHGV PVALASNSSR ANIESKISYH EGWKECFSVI VGSDEVSKGK PSPDIFLEAA KRLKKDPADC LVIEDSVPGV MAGKAAGTKV IAVPSLPKQT
201: HLYTSADEVI NSLLDIRLEK WGLPPFQDWI ENTLPIDPWH IGGPVIKGFG RGSKVLGIPT ANLSTKDYAD ELVEHPSGVY FGWAGLAKRG VFKMVMSIGW
301: NPYFNNKEKT IEPWLLHDFT EDFYGEELRL IIVGYIRPEA NFSSLESLIA KIHEDREVAE KALDLPSYAK FKGDPYLTK

Arabidopsis Description

FHYFMN/FHY [Source:UniProtKB/TrEMBL;Acc:A0A178V341]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.