CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
nucleus 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002728.1-P	Field mustard	cytosol	100.0	100.0
AT5G57440.1	Thale cress	cytosol	92.44	91.67
CDY25908	Canola	cytosol	95.8	81.72
CDY57289	Canola	cytosol	39.5	78.33
VIT_11s0052g00860.t01	Wine grape	cytosol	76.47	77.78
Solyc10g054280.1.1	Tomato	cytosol	79.41	76.83
KRH19024	Soybean	nucleus	75.21	74.27
CDY42775	Canola	mitochondrion	83.19	68.51
CDY42776	Canola	mitochondrion	83.19	68.51
GSMUA_Achr9P22850_001	Banana	mitochondrion	68.49	68.2
CDX92735	Canola	mitochondrion	83.61	68.15
TraesCS3D01G503200.1	Wheat	cytosol	68.49	66.8
TraesCS3A01G495800.1	Wheat	cytosol	67.65	66.53
Os08t0243600-01	Rice	cytosol, nucleus	66.39	65.83
TraesCS7D01G118300.1	Wheat	cytosol	63.45	61.63
Zm00001d024155_P001	Maize	cytosol	62.18	60.16
EES13604	Sorghum	cytosol	61.34	59.84
Zm00001d024413_P001	Maize	extracellular	67.23	57.76
TraesCS3B01G559400.1	Wheat	mitochondrion, plastid	68.07	57.24
PGSC0003DMT400062819	Potato	mitochondrion	48.74	55.24
TraesCS7B01G017100.1	Wheat	plastid	63.87	53.15
KXG24804	Sorghum	plastid	65.13	52.9
HORVU3Hr1G109780.2	Barley	cytosol	67.23	49.69
CDX82826	Canola	cytosol	26.05	16.36
CDX79065	Canola	cytosol	26.05	16.36

Protein Annotations

Gene3D:1.10.150.240	Gene3D:3.40.50.1000	MapMan:5.7.4.1	GO:A0A078HN98	UniProt:A0A078HN98	EnsemblPlants:CDY38298
ProteinID:CDY38298	ProteinID:CDY38298.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00065665001	InterPro:HAD-SF_hydro_IA	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023198
InterPro:IPR023214	PFAM:PF13419	InterPro:PGP-like_dom2	PANTHER:PTHR18901	PANTHER:PTHR18901:SF38	SUPFAM:SSF56784
TIGRFAMs:TIGR01509	UniParc:UPI0002544F8C	:	:	:	:

Description

BnaA10g11460DBnaA10g11460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HN98]

Coordinates

chrLK032420:-:325573..327507

Molecular Weight (calculated)

26540.9 Da

IEP (calculated)

5.571

GRAVY (calculated)

-0.255

Length

238 amino acids

Sequence
(BLAST)

001: MSTPATAGRG SITHVIFDMD GLLLDTEKFY TEVQEIILAR FNKTFDWSLK AKMMGRKAIE AARIFVDESG ISDSLSAEDF LVEREAMLQE LFPTSELMPG
101: ASRLIKHLHA KNIPICIATG THTRHFDLKT QRHKELFSLM HHVVRGDDPE VKQGKPAPDG FLAASRRFKD GPVDPQKVLV FEDAPSGVLA AKNAGMNVVM
201: VPDPRLDISH QDVADQIMTS LLDFKPEEWG LPPFEDSN

Best Arabidopsis Sequence Match ( AT5G57440.1 )
(BLAST)

001: MSNPAAVTAG RGSITHVIFD MDGLLLDTEK FYTEVQEIIL ARFNKKFDWS LKAKMMGRKA IEAARIFVEE SGISDSLSAE DFLVERESML QDLFPTSELM
101: PGASRLIKHL HVKNIPICIA TGTHTRHYDL KTQRHRELFS LMHHVVRGDD PEVKQGKPAP DGFLAAARRF KDGPVDSQKV LVFEDAPSGV LAAKNAGMNV
201: VMVPDPRLDI SHQDVADQII TSLVDFKPEE WGLPPFEDSN

Arabidopsis Description

GPP2(DL)-glycerol-3-phosphatase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZP1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.