Factsheet for Os08t0243600-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 4
nucleus 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 15659629

gfp PMID: 15659629 doi

K Moriguchi, T Suzuki, Y Ito, Y Yamazaki, Y Niwa, N Kurata

Plant Genetics Laboratory, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G495800.1	Wheat	cytosol	86.67	85.95
TraesCS3D01G503200.1	Wheat	cytosol	87.08	85.66
TraesCS7D01G118300.1	Wheat	cytosol	77.5	75.92
Zm00001d024413_P001	Maize	extracellular	86.25	74.73
TraesCS3B01G559400.1	Wheat	mitochondrion, plastid	85.83	72.79
GSMUA_Achr9P22850_001	Banana	mitochondrion	70.42	70.71
KXG24804	Sorghum	plastid	86.25	70.65
VIT_11s0052g00860.t01	Wine grape	cytosol	68.75	70.51
TraesCS7B01G017100.1	Wheat	plastid	79.58	66.78
CDY38298	Canola	cytosol	65.83	66.39
Bra002728.1-P	Field mustard	cytosol	65.83	66.39
KRH19024	Soybean	nucleus	65.83	65.56
Solyc10g054280.1.1	Tomato	cytosol	67.08	65.45
Bra019139.1-P	Field mustard	cytosol	65.42	64.34
AT5G57440.1	Thale cress	cytosol	63.75	63.75
HORVU3Hr1G109780.2	Barley	cytosol	85.42	63.66
CDY57289	Canola	cytosol	31.25	62.5
CDY42776	Canola	mitochondrion	65.83	54.67
CDY42775	Canola	mitochondrion	65.83	54.67
CDY25908	Canola	cytosol	62.92	54.12
CDX92735	Canola	mitochondrion	65.83	54.11
AT4G25840.1	Thale cress	mitochondrion	66.67	53.69
PGSC0003DMT400062819	Potato	mitochondrion	45.83	52.38
Os01t0757900-01	Rice	cytosol	25.83	31.63
Os10t0209300-00	Rice	cytosol	11.25	31.4
Os10t0464400-01	Rice	cytosol	33.33	20.15

Protein Annotations

Gene3D:1.10.150.240	Gene3D:3.40.50.1000	EntrezGene:4345048	MapMan:5.7.4.1	EMBL:AB110183	EMBL:AK101443
ProteinID:BAD05444.1	ProteinID:BAD05640.1	ProteinID:BAF23261.1	ProteinID:BAT04513.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0006114
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016311	GO:GO:0016787	GO:GO:0043136	InterPro:HAD-SF_hydro_IA	InterPro:HAD-like_sf	InterPro:HAD_sf
InterPro:IPR023198	InterPro:IPR023214	EnsemblPlantsGene:Os08g0243600	EnsemblPlants:Os08t0243600-01	PFAM:PF13419	InterPro:PGP-like_dom2
PANTHER:PTHR18901	PANTHER:PTHR18901:SF38	UniProt:Q7XXR4	SUPFAM:SSF56784	TIGRFAMs:TIGR01509	UniParc:UPI00001AB0C5
RefSeq:XP_015648459.1	:	:	:	:	:

Description

Haloacid dehalogenase-like hydrolase domain containing protein. (Os08t0243600-01)

Coordinates

chr8:-:8767789..8771574

Molecular Weight (calculated)

26303.6 Da

IEP (calculated)

5.530

GRAVY (calculated)

-0.116

Length

240 amino acids

Sequence
(BLAST)

001: MASAADEGNA AAPRAAVSHV IFDMDGLLLD TEGFYTEVQE KILARYGKVF DWSLKAKMMG KKATESARIF VDECGLDGLL TPEQFLEERE SMLQELFPSC
101: AVLPGVLRLI HHLHANGVPM AVATGSHKRH FALKTQNHKE MFTLMHHVVM GDDPDVKTGK PSPDIFLAAM RRFEGNIEPS NCLVFEDAPS GVAAAKNAGM
201: YAVMVPDSRL DVSYHKGADQ VLSSLLDFKP GEWGLPPFTD

Best Arabidopsis Sequence Match ( AT4G25840.1 )
(BLAST)

001: MLTTPTRFVA LRIPFRSSNK IPISIAPSPK VFPRKPVIRV PASLRFVATM STPAAAVNAT VTVTDAGRGS ITHVIFDMDG LLLDTEKFYT EVQEKILARY
101: NKTFDWSLKA KMMGRKAIEA ARLFVDESGI SDSLSAEDFI VERESMLQDL FPTSDLMPGA SRLLRHLHGK GIPICIATGT HTRHFDLKTQ RHRELFSLMH
201: HVVRGDDPEV KEGKPAPDGF LAASRRFEDG PVDPRKVLVF EDAPSGVQAA KNAGMNVIMV PDSRLDKSYC NVADQVLASL LDFKPEEWGL PSFQDSHN

Arabidopsis Description

GPP1(DL)-glycerol-3-phosphatase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4JTE7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.