CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 3
nucleus 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0052g00860.t01	Wine grape	cytosol	75.93	78.21
Bra002728.1-P	Field mustard	cytosol	74.27	75.21
CDY38298	Canola	cytosol	74.27	75.21
AT5G57440.1	Thale cress	cytosol	72.61	72.92
Solyc10g054280.1.1	Tomato	cytosol	74.27	72.76
Bra019139.1-P	Field mustard	cytosol	72.61	71.72
CDY57289	Canola	cytosol	34.44	69.17
GSMUA_Achr9P22850_001	Banana	mitochondrion	67.63	68.2
TraesCS3D01G503200.1	Wheat	cytosol	66.81	65.98
Os08t0243600-01	Rice	cytosol, nucleus	65.56	65.83
TraesCS3A01G495800.1	Wheat	cytosol	65.98	65.7
Zm00001d024155_P001	Maize	cytosol	63.49	62.2
CDY25908	Canola	cytosol	71.37	61.65
EES13604	Sorghum	cytosol	62.24	61.48
TraesCS7D01G118300.1	Wheat	cytosol	61.41	60.41
CDX92735	Canola	mitochondrion	73.03	60.27
CDY42775	Canola	mitochondrion	72.2	60.21
CDY42776	Canola	mitochondrion	72.2	60.21
Zm00001d024413_P001	Maize	extracellular	68.05	59.21
AT4G25840.1	Thale cress	mitochondrion	71.78	58.05
TraesCS3B01G559400.1	Wheat	mitochondrion, plastid	65.56	55.83
KXG24804	Sorghum	plastid	65.15	53.58
PGSC0003DMT400062819	Potato	mitochondrion	46.47	53.33
TraesCS7B01G017100.1	Wheat	plastid	62.24	52.45
HORVU3Hr1G109780.2	Barley	cytosol	65.98	49.38
KRH27040	Soybean	cytosol	30.29	20.0
KRH22289	Soybean	cytosol	29.46	19.51
KRH49951	Soybean	nucleus	30.29	19.36
KRH41925	Soybean	cytosol	4.56	5.7

Protein Annotations

Gene3D:1.10.150.240	Gene3D:3.40.50.1000	MapMan:5.7.4.1	EMBL:ACUP02008159	EnsemblPlantsGene:GLYMA_13G096400	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975
GO:GO:0006114	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016311
GO:GO:0016787	GO:GO:0043136	InterPro:HAD-SF_hydro_IA	InterPro:HAD-like_sf	InterPro:HAD_sf	UniProt:I1LVR2
InterPro:IPR023198	InterPro:IPR023214	EnsemblPlants:KRH19024	ProteinID:KRH19024	ProteinID:KRH19024.1	PFAM:PF13419
InterPro:PGP-like_dom2	PANTHER:PTHR18901	PANTHER:PTHR18901:SF38	SUPFAM:SSF56784	TIGRFAMs:TIGR01509	UniParc:UPI000233C607

Description

hypothetical protein

Coordinates

chr13:+:21129044..21134278

Molecular Weight (calculated)

26688.0 Da

IEP (calculated)

6.176

GRAVY (calculated)

-0.222

Length

241 amino acids

Sequence
(BLAST)

001: MAHPSAVVSV RRPITHVVFD MDGLLLDTER FYTQVQEIIL ARYNKTFDWS LKAKMMGKKA IESARIFVEE TGISDSLSAE QFLVEREDML EKLFPTSEPM
101: PGASRLVNHL HAKGVPVCVA TGSHKRHFEL KTQRHHEIFS LMHHVVLGGG PEAKQSKPSP DGFLAAAKRF EGGPVDPSNI LVFEDAPAGV LAAKNAGMSV
201: VMVPDPRLDK SFLDTADQVL NSLLDFNPSE WGLPPFDDNR D

Best Arabidopsis Sequence Match ( AT5G57440.1 )
(BLAST)

001: MSNPAAVTAG RGSITHVIFD MDGLLLDTEK FYTEVQEIIL ARFNKKFDWS LKAKMMGRKA IEAARIFVEE SGISDSLSAE DFLVERESML QDLFPTSELM
101: PGASRLIKHL HVKNIPICIA TGTHTRHYDL KTQRHRELFS LMHHVVRGDD PEVKQGKPAP DGFLAAARRF KDGPVDSQKV LVFEDAPSGV LAAKNAGMNV
201: VMVPDPRLDI SHQDVADQII TSLVDFKPEE WGLPPFEDSN

Arabidopsis Description

GPP2(DL)-glycerol-3-phosphatase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZP1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.