CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57289	Canola	cytosol	37.33	90.83
CDY38298	Canola	cytosol	68.15	83.61
CDY42775	Canola	mitochondrion	81.51	82.35
CDY42776	Canola	mitochondrion	81.51	82.35
Solyc10g054280.1.1	Tomato	cytosol	65.07	77.24
VIT_11s0052g00860.t01	Wine grape	cytosol	61.3	76.5
AT4G25840.1	Thale cress	mitochondrion	77.05	75.5
KRH19024	Soybean	nucleus	60.27	73.03
CDY25908	Canola	cytosol	65.75	68.82
GSMUA_Achr9P22850_001	Banana	mitochondrion	55.14	67.36
TraesCS3A01G495800.1	Wheat	cytosol	55.14	66.53
TraesCS3D01G503200.1	Wheat	cytosol	55.48	66.39
Os08t0243600-01	Rice	cytosol, nucleus	54.11	65.83
TraesCS7D01G118300.1	Wheat	cytosol	51.03	60.82
EES13604	Sorghum	cytosol	50.68	60.66
Zm00001d024413_P001	Maize	extracellular	57.53	60.65
Zm00001d024155_P001	Maize	cytosol	50.68	60.16
TraesCS3B01G559400.1	Wheat	mitochondrion, plastid	56.51	58.3
PGSC0003DMT400062819	Potato	mitochondrion	41.44	57.62
KXG24804	Sorghum	plastid	56.16	55.97
TraesCS7B01G017100.1	Wheat	plastid	53.08	54.2
HORVU3Hr1G109780.2	Barley	cytosol	57.53	52.17
CDX82826	Canola	cytosol	23.63	18.21
CDX79065	Canola	cytosol	23.63	18.21

Protein Annotations

Gene3D:1.10.150.240	Gene3D:3.40.50.1000	MapMan:5.7.4.1	GO:A0A078DTR0	EnsemblPlants:CDX92735	ProteinID:CDX92735
ProteinID:CDX92735.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
EnsemblPlantsGene:GSBRNA2T00154555001	InterPro:HAD-SF_hydro_IA	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023198	InterPro:IPR023214
PFAM:PF13419	InterPro:PGP-like_dom2	PANTHER:PTHR18901	PANTHER:PTHR18901:SF38	SUPFAM:SSF56784	TIGRFAMs:TIGR01509
UniParc:UPI0004EDBE3F	SEG:seg	:	:	:	:

Description

BnaC07g39930D

Coordinates

chrLK031873:+:565774..567544

Molecular Weight (calculated)

32273.8 Da

IEP (calculated)

7.670

GRAVY (calculated)

-0.226

Length

292 amino acids

Sequence
(BLAST)

001: MLASPTRFAA QRISLRSSNT IPTSFIPPFP RGFPRRSVTK ASARIVAAMS TTSVNAVGDA GRGSITHVIF DMDGLLLDTE KFYTEVQEKI LARYNKTFDW
101: SLKAKMMGRK AIEAATLFVE ECGISDSLSP EAFIVERESM LQDLFPTSDL MPGASRLLRH LHGKGIPICV ATGTHTRHFD LKTQRHRELF SLMHHIVRGD
201: DPEVKQGKPA PDGFLAAARR FEDGPVDPRK ALVFEDAPSG VMAAKNAGMN VIMVPDPRLD KSYCTVADQV LASLLDFKPE EWGLPPFEDS QN

Best Arabidopsis Sequence Match ( AT4G25840.1 )
(BLAST)

001: MLTTPTRFVA LRIPFRSSNK IPISIAPSPK VFPRKPVIRV PASLRFVATM STPAAAVNAT VTVTDAGRGS ITHVIFDMDG LLLDTEKFYT EVQEKILARY
101: NKTFDWSLKA KMMGRKAIEA ARLFVDESGI SDSLSAEDFI VERESMLQDL FPTSDLMPGA SRLLRHLHGK GIPICIATGT HTRHFDLKTQ RHRELFSLMH
201: HVVRGDDPEV KEGKPAPDGF LAASRRFEDG PVDPRKVLVF EDAPSGVQAA KNAGMNVIMV PDSRLDKSYC NVADQVLASL LDFKPEEWGL PSFQDSHN

Arabidopsis Description

GPP1(DL)-glycerol-3-phosphatase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4JTE7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.