Factsheet for VIT_11s0052g00860.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G57440.1	Thale cress	cytosol	79.49	77.5
Solyc10g054280.1.1	Tomato	cytosol	81.2	77.24
Bra002728.1-P	Field mustard	cytosol	77.78	76.47
CDY38298	Canola	cytosol	77.78	76.47
KRH19024	Soybean	nucleus	78.21	75.93
Bra019139.1-P	Field mustard	cytosol	76.07	72.95
TraesCS3A01G495800.1	Wheat	cytosol	71.79	69.42
TraesCS3D01G503200.1	Wheat	cytosol	71.79	68.85
Os08t0243600-01	Rice	cytosol, nucleus	70.51	68.75
CDY57289	Canola	cytosol	33.76	65.83
GSMUA_Achr9P22850_001	Banana	mitochondrion	66.24	64.85
TraesCS7D01G118300.1	Wheat	cytosol	65.81	62.86
CDY25908	Canola	cytosol	74.79	62.72
CDY42775	Canola	mitochondrion	76.07	61.59
CDY42776	Canola	mitochondrion	76.07	61.59
CDX92735	Canola	mitochondrion	76.5	61.3
EES13604	Sorghum	cytosol	63.25	60.66
Zm00001d024155_P001	Maize	cytosol	63.68	60.57
Zm00001d024413_P001	Maize	extracellular	70.51	59.57
AT4G25840.1	Thale cress	mitochondrion	75.64	59.4
TraesCS3B01G559400.1	Wheat	mitochondrion, plastid	71.79	59.36
KXG24804	Sorghum	plastid	70.09	55.97
TraesCS7B01G017100.1	Wheat	plastid	66.24	54.2
PGSC0003DMT400062819	Potato	mitochondrion	47.86	53.33
HORVU3Hr1G109780.2	Barley	cytosol	71.37	51.86
VIT_12s0028g02210.t01	Wine grape	cytosol	32.05	20.33
VIT_00s0181g00130.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	32.91	19.85
VIT_12s0028g02200.t01	Wine grape	plastid	32.05	19.08
VIT_00s0181g00140.t01	Wine grape	mitochondrion, plastid	32.48	18.91

Protein Annotations

Gene3D:1.10.150.240	EntrezGene:100246255	wikigene:100246255	Gene3D:3.40.50.1000	MapMan:5.7.4.1	ProteinID:CBI17840
ProteinID:CBI17840.3	UniProt:D7SQA9	EMBL:FN594964	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0006114	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016311	GO:GO:0016787	GO:GO:0043136
InterPro:HAD-SF_hydro_IA	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023198	InterPro:IPR023214	EntrezGene:LOC100246255
wikigene:LOC100246255	PFAM:PF13419	InterPro:PGP-like_dom2	PANTHER:PTHR18901	PANTHER:PTHR18901:SF38	SUPFAM:SSF56784
TIGR:TC59925	TIGRFAMs:TIGR01509	UniParc:UPI00015CC2E7	ArrayExpress:VIT_11s0052g00860	EnsemblPlantsGene:VIT_11s0052g00860	EnsemblPlants:VIT_11s0052g00860.t01
unigene:Vvi.10490	RefSeq:XP_002270586	RefSeq:XP_002270586.1	:	:	:

Description

No Description!

Coordinates

chr11:+:18435079..18444982

Molecular Weight (calculated)

25979.2 Da

IEP (calculated)

5.564

GRAVY (calculated)

-0.153

Length

234 amino acids

Sequence
(BLAST)

001: MAPKTSISHV IFDMDGLLLD TEKFYTEVQE IILARYNKTF DWSLKAKMMG KKAIEAARVF VEETGISDSL SAEDFLVERE EMLRKLFPTS ELMPGASRLV
101: KHLHASGIPI CVATGSHRRH FELKTQRHGE VFSLMHHVVL GDDPEVKQGK PSPDIFLAAA RRFEGGPVDS QKILVFEDAP SGVGAAKNAG MYAVMVPDPR
201: LDISFHEAAD QVLSSLLDFN PNDWGLPPFP DTTI

Best Arabidopsis Sequence Match ( AT5G57440.1 )
(BLAST)

001: MSNPAAVTAG RGSITHVIFD MDGLLLDTEK FYTEVQEIIL ARFNKKFDWS LKAKMMGRKA IEAARIFVEE SGISDSLSAE DFLVERESML QDLFPTSELM
101: PGASRLIKHL HVKNIPICIA TGTHTRHYDL KTQRHRELFS LMHHVVRGDD PEVKQGKPAP DGFLAAARRF KDGPVDSQKV LVFEDAPSGV LAAKNAGMNV
201: VMVPDPRLDI SHQDVADQII TSLVDFKPEE WGLPPFEDSN

Arabidopsis Description

GPP2(DL)-glycerol-3-phosphatase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZP1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.