Factsheet for VIT_12s0028g02200.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
plastid 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0028g02210.t01	Wine grape	cytosol	77.1	82.11
KRH22289	Soybean	cytosol	53.18	57.42
KRH27040	Soybean	cytosol	52.67	56.71
PGSC0003DMT400052621	Potato	cytosol	50.89	52.22
Solyc07g053270.2.1	Tomato	cytosol	50.89	52.22
GSMUA_Achr4P10550_001	Banana	cytosol	44.78	46.07
Os01t0757900-01	Rice	cytosol	21.88	43.88
EES03641	Sorghum	cytosol	39.19	41.85
TraesCS3A01G294800.1	Wheat	cytosol	39.19	40.85
TraesCS3D01G294900.3	Wheat	cytosol	40.2	40.51
TraesCS3B01G329400.2	Wheat	cytosol	39.69	40.41
TraesCS3A01G306900.1	Wheat	cytosol	38.17	37.22
HORVU3Hr1G072950.3	Barley	cytosol	40.71	36.95
VIT_00s0181g00130.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	35.62	36.08
VIT_00s0181g00140.t01	Wine grape	mitochondrion, plastid	35.88	35.07
VIT_11s0052g00860.t01	Wine grape	cytosol	19.08	32.05
Zm00001d012707_P003	Maize	cytosol	15.78	28.84

Protein Annotations

KEGG:00740+2.7.1.26	Gene3D:1.10.150.240	EntrezGene:100253969	wikigene:100253969	Gene3D:2.40.30.30	Gene3D:3.40.50.1000
MapMan:35.1	ProteinID:CBI21982	ProteinID:CBI21982.3	UniProt:E0CTR6	EMBL:FN595235	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0008531	GO:GO:0009058	GO:GO:0009231
GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0016787	InterPro:HAD-SF_hydro_IA
InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023198	InterPro:IPR023214	InterPro:IPR023465	EntrezGene:LOC100253969
wikigene:LOC100253969	PFAM:PF13419	InterPro:PGP-like_dom2	PRINTS:PR00413	PANTHER:PTHR22749	PANTHER:PTHR22749:SF4
InterPro:Riboflavin_kinase	InterPro:Riboflavin_kinase_dom_sf	SUPFAM:SSF56784	SUPFAM:SSF82114	TIGRFAMs:TIGR01509	UniParc:UPI00015C976C
ArrayExpress:VIT_12s0028g02200	EnsemblPlantsGene:VIT_12s0028g02200	EnsemblPlants:VIT_12s0028g02200.t01	RefSeq:XP_002276615	RefSeq:XP_002276615.2	RefSeq:XP_010657034.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr12:+:2990225..2994818

Molecular Weight (calculated)

43217.9 Da

IEP (calculated)

5.056

GRAVY (calculated)

-0.105

Length

393 amino acids

Sequence
(BLAST)

001: MPLPPCSFLN SIPLKPISPS SSLSAMNGCC GPQCDGAAHI QAVIFDLDGT LLDTEKVTKN VLKEFLEKYG KVIDREQEDT RLGISQLEAA IAVIKEYDLP
101: LTPQQFIDEI SPIYKERWPT AKPLPGVNRL MKHLQKHGVP FALASNSKKE NVDAKISYHQ GWKENFVAVL GSDQVKSGKP SPDLFLEAAK RMGVDAAHCL
201: VIEDSLVGVR AANAAGMKVA AVPSQSKADY ASIADSVLHS LLEFQPELWD LPPFEDWVDS ALPIEPIYAS GLFSNGFLCE AEDDESCTFP SQVRGLYFGW
301: AKLNMDGIFK VLVGVGRGHC TCTAKRKIKL WIIDDSDGHI ADQHMQLSLV GFIRGLNKET LMDLEEVEEE KSIASASLDL PMFLHHTRAP LFP

Best Arabidopsis Sequence Match ( AT4G21470.1 )
(BLAST)

001: MSMSNSLKKL SSCVLIDLDG TLINTDGVVG DILRKYLCKY GKQWDGRESL KIVGKTPVEA ATTIVEDYEL PCKVDEFNSE FYPLFSAQMD KIKSLPGANR
101: LIRHLKCHGV PVALASNSSR ANIESKISYH EGWKECFSVI VGSDEVSKGK PSPDIFLEAA KRLKKDPADC LVIEDSVPGV MAGKAAGTKV IAVPSLPKQT
201: HLYTSADEVI NSLLDIRLEK WGLPPFQDWI ENTLPIDPWH IGGPVIKGFG RGSKVLGIPT ANLSTKDYAD ELVEHPSGVY FGWAGLAKRG VFKMVMSIGW
301: NPYFNNKEKT IEPWLLHDFT EDFYGEELRL IIVGYIRPEA NFSSLESLIA KIHEDREVAE KALDLPSYAK FKGDPYLTK

Arabidopsis Description

FHYFMN/FHY [Source:UniProtKB/TrEMBL;Acc:A0A178V341]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.