Factsheet for VIT_00s0181g00140.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g04420.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G21470.1	VIT_05s0020g04420.t01	AT4G14640.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0181g00130.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	94.28	97.68
KRH41925	Soybean	cytosol	38.06	79.27
PGSC0003DMT400057721	Potato	cytosol	52.74	77.37
KRH49951	Soybean	nucleus	72.39	77.19
Solyc02g079100.2.1	Tomato	extracellular	71.64	74.81
GSMUA_Achr5P20490_001	Banana	cytosol	70.65	73.2
TraesCS1A01G146600.1	Wheat	cytosol	70.65	71.54
CDX79065	Canola	cytosol	67.41	71.5
CDX82826	Canola	cytosol	67.16	71.24
TraesCS1D01G144800.1	Wheat	cytosol	70.15	71.03
TraesCS1B01G164900.1	Wheat	cytosol	70.15	71.03
AT4G21470.1	Thale cress	cytosol	66.92	70.98
GSMUA_Achr1P03460_001	Banana	cytosol, nucleus, plasma membrane	67.41	70.94
Os10t0464400-01	Rice	cytosol	69.9	70.78
OQU91676	Sorghum	cytosol, nucleus, plastid	68.41	69.97
EER92955	Sorghum	plastid	68.66	69.7
Os10t0209300-00	Rice	cytosol	12.69	59.3
HORVU1Hr1G038850.2	Barley	plastid	70.9	58.4
Zm00001d037045_P004	Maize	cytosol	68.41	41.42
VIT_12s0028g02210.t01	Wine grape	cytosol	36.07	39.3
VIT_12s0028g02200.t01	Wine grape	plastid	35.07	35.88
VIT_11s0052g00860.t01	Wine grape	cytosol	18.91	32.48

Protein Annotations

KEGG:00740+2.7.1.26	Gene3D:1.10.150.240	EntrezGene:100854313	wikigene:100854313	Gene3D:2.40.30.30	Gene3D:3.40.50.1000
MapMan:7.10.8	ProteinID:CCB48277	ProteinID:CCB48277.1	UniProt:F6H7T5	EMBL:FN595252	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0008531	GO:GO:0009058	GO:GO:0009231
GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0016787	InterPro:HAD-SF_hydro_IA
InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023198	InterPro:IPR023214	InterPro:IPR023465	EntrezGene:LOC100854313
wikigene:LOC100854313	PFAM:PF01687	PFAM:PF13419	InterPro:PGP-like_dom2	PRINTS:PR00413	PANTHER:PTHR22749
PANTHER:PTHR22749:SF1	InterPro:Riboflavin_kinase	InterPro:Riboflavin_kinase_bac/euk	InterPro:Riboflavin_kinase_dom_sf	SMART:SM00904	SUPFAM:SSF56784
SUPFAM:SSF82114	TIGRFAMs:TIGR01509	UniParc:UPI000210958C	ArrayExpress:VIT_00s0181g00140	EnsemblPlantsGene:VIT_00s0181g00140	EnsemblPlants:VIT_00s0181g00140.t01
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:7783664..7791070

Molecular Weight (calculated)

44459.7 Da

IEP (calculated)

6.141

GRAVY (calculated)

-0.073

Length

402 amino acids

Sequence
(BLAST)

001: MAVSLLAGRM RMPSIISAKP LKKLVSGVIL DLDGTLLNTD GIVSEVLKVF LVKYEKQWNG KVAHKLIGKT PFEAAAVIVE DYGLPCTTEE LMSEITPMFS
101: NQWCNIKALP GANRLIKHLH GHRVPMALAS NSPRASIESK ISCHQGWKES FSVIIGGDEV RMGKPSPEIF LEASKRLSVK PSNCLVIEDS LPGVMAGKAA
201: GMEVVAVPSI PKQSHIFNSA DEVINSLLDL RPEQWGLPSF QDWVEDTLPV EPWYIGGPVI KGFGRGSKVL GVPTANLSTE GYSTLLSEQS SGVYFGWAGL
301: SKQGVYKMVM SIGWNPYFNN TEKTIEPWLL HEFDEDFYGE ELHLVIVGYI RPEANFSSLE SLIAKIHEDR RIAERALDLP LYSNFKDDPY LKIPLHGVEN
401: HS

Best Arabidopsis Sequence Match ( AT4G21470.1 )
(BLAST)

001: MSMSNSLKKL SSCVLIDLDG TLINTDGVVG DILRKYLCKY GKQWDGRESL KIVGKTPVEA ATTIVEDYEL PCKVDEFNSE FYPLFSAQMD KIKSLPGANR
101: LIRHLKCHGV PVALASNSSR ANIESKISYH EGWKECFSVI VGSDEVSKGK PSPDIFLEAA KRLKKDPADC LVIEDSVPGV MAGKAAGTKV IAVPSLPKQT
201: HLYTSADEVI NSLLDIRLEK WGLPPFQDWI ENTLPIDPWH IGGPVIKGFG RGSKVLGIPT ANLSTKDYAD ELVEHPSGVY FGWAGLAKRG VFKMVMSIGW
301: NPYFNNKEKT IEPWLLHDFT EDFYGEELRL IIVGYIRPEA NFSSLESLIA KIHEDREVAE KALDLPSYAK FKGDPYLTK

Arabidopsis Description

FHYFMN/FHY [Source:UniProtKB/TrEMBL;Acc:A0A178V341]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.