Factsheet for VIT_00s0181g00130.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi, nucleus

Predictor Summary:

cytosol 3
plastid 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome, secretory
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g04420.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G21470.1	VIT_05s0020g04420.t01	AT4G14640.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0181g00140.t01	Wine grape	mitochondrion, plastid	97.68	94.28
KRH41925	Soybean	cytosol	39.18	78.76
KRH49951	Soybean	nucleus	74.48	76.66
PGSC0003DMT400057721	Potato	cytosol	53.87	76.28
Solyc02g079100.2.1	Tomato	extracellular	74.23	74.81
GSMUA_Achr5P20490_001	Banana	cytosol	73.2	73.2
CDX79065	Canola	cytosol	69.85	71.5
TraesCS1A01G146600.1	Wheat	cytosol	72.94	71.28
CDX82826	Canola	cytosol	69.59	71.24
AT4G21470.1	Thale cress	cytosol	69.59	71.24
Os10t0464400-01	Rice	cytosol	72.68	71.03
TraesCS1B01G164900.1	Wheat	cytosol	72.42	70.78
TraesCS1D01G144800.1	Wheat	cytosol	72.42	70.78
GSMUA_Achr1P03460_001	Banana	cytosol, nucleus, plasma membrane	69.59	70.68
EER92955	Sorghum	plastid	71.65	70.2
OQU91676	Sorghum	cytosol, nucleus, plastid	70.62	69.72
Os10t0209300-00	Rice	cytosol	13.4	60.47
HORVU1Hr1G038850.2	Barley	plastid	72.68	57.79
Zm00001d037045_P004	Maize	cytosol	70.88	41.42
VIT_12s0028g02210.t01	Wine grape	cytosol	37.37	39.3
VIT_12s0028g02200.t01	Wine grape	plastid	36.08	35.62
VIT_11s0052g00860.t01	Wine grape	cytosol	19.85	32.91

Protein Annotations

KEGG:00740+2.7.1.26	Gene3D:1.10.150.240	EntrezGene:100261961	wikigene:100261961	Gene3D:2.40.30.30	Gene3D:3.40.50.1000
MapMan:7.10.8	ProteinID:CBI23313	ProteinID:CBI23313.3	UniProt:E0CVY0	EMBL:FN595252	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0008531	GO:GO:0009058	GO:GO:0009231
GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0016787	InterPro:HAD-SF_hydro_IA
InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023198	InterPro:IPR023214	InterPro:IPR023465	EntrezGene:LOC100261961
wikigene:LOC100261961	PFAM:PF01687	PFAM:PF13419	InterPro:PGP-like_dom2	PRINTS:PR00413	PANTHER:PTHR22749
PANTHER:PTHR22749:SF1	InterPro:Riboflavin_kinase	InterPro:Riboflavin_kinase_bac/euk	InterPro:Riboflavin_kinase_dom_sf	SMART:SM00904	SUPFAM:SSF56784
SUPFAM:SSF82114	TIGRFAMs:TIGR01509	UniParc:UPI0001BE1DA3	ArrayExpress:VIT_00s0181g00130	EnsemblPlantsGene:VIT_00s0181g00130	EnsemblPlants:VIT_00s0181g00130.t01
RefSeq:XP_002271233	RefSeq:XP_002271233.2	RefSeq:XP_003634998	RefSeq:XP_003634998.1	RefSeq:XP_010646147.1	RefSeq:XP_010646148.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:7772093..7777915

Molecular Weight (calculated)

42820.5 Da

IEP (calculated)

5.791

GRAVY (calculated)

-0.078

Length

388 amino acids

Sequence
(BLAST)

001: MSAAKPLKKL VSGVILDLDG TLLNTDGIVS EVLKVFLVKY EKQWNGKVAH KLIGKTPFEA AAVIVEDYGL PCTTEELMSE ITPMFSNQWC NIKALPGANR
101: LIKHLHGHGV PIALASNSPR ASIESKISCH QGWKESFSVI IGGDEVRMGK PSPEIFFEAS KRLSVKPSNC LVIEDSLPGV MAGKAAGMEV VAVPSIPNQS
201: HIFNSADEVI NSLLDLRPEL WGLPSFQDWV EDTLPVEPWY IGGPVIKGFG RGSKVLGVPT ANLSTEGYST LLSEQSSGVY FGWAGLSKQG VYKMVMSIGW
301: NPYFNNTEKT IEPWLLHEFD EDFYGEELHL VIVGYIRPEA NFSSLESLIA KIHEDRRIAE RALDLPLYSN FKDDPYLKIP LHGVKNHS

Best Arabidopsis Sequence Match ( AT4G21470.1 )
(BLAST)

001: MSMSNSLKKL SSCVLIDLDG TLINTDGVVG DILRKYLCKY GKQWDGRESL KIVGKTPVEA ATTIVEDYEL PCKVDEFNSE FYPLFSAQMD KIKSLPGANR
101: LIRHLKCHGV PVALASNSSR ANIESKISYH EGWKECFSVI VGSDEVSKGK PSPDIFLEAA KRLKKDPADC LVIEDSVPGV MAGKAAGTKV IAVPSLPKQT
201: HLYTSADEVI NSLLDIRLEK WGLPPFQDWI ENTLPIDPWH IGGPVIKGFG RGSKVLGIPT ANLSTKDYAD ELVEHPSGVY FGWAGLAKRG VFKMVMSIGW
301: NPYFNNKEKT IEPWLLHDFT EDFYGEELRL IIVGYIRPEA NFSSLESLIA KIHEDREVAE KALDLPSYAK FKGDPYLTK

Arabidopsis Description

FHYFMN/FHY [Source:UniProtKB/TrEMBL;Acc:A0A178V341]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.