CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG37587
KXG37588

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G21470.1	KXG37587	AT4G14640.1	17360592
AT4G21470.1	KXG37588	AT4G14640.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU91676	Sorghum	cytosol, nucleus, plastid	87.63	88.3
Os10t0464400-01	Rice	cytosol	84.85	84.63
TraesCS1A01G146600.1	Wheat	cytosol	84.6	84.38
TraesCS1B01G164900.1	Wheat	cytosol	84.34	84.13
TraesCS1D01G144800.1	Wheat	cytosol	84.09	83.88
GSMUA_Achr5P20490_001	Banana	cytosol	74.49	76.03
Os10t0209300-00	Rice	cytosol	16.41	75.58
PGSC0003DMT400057721	Potato	cytosol	50.25	72.63
GSMUA_Achr1P03460_001	Banana	cytosol, nucleus, plasma membrane	69.95	72.51
VIT_00s0181g00130.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	70.2	71.65
KRH41925	Soybean	cytosol	34.09	69.95
Solyc02g079100.2.1	Tomato	extracellular	67.68	69.61
VIT_00s0181g00140.t01	Wine grape	mitochondrion, plastid	69.7	68.66
CDX79065	Canola	cytosol	65.15	68.07
KRH49951	Soybean	nucleus	64.65	67.9
HORVU1Hr1G038850.2	Barley	plastid	83.59	67.83
CDX82826	Canola	cytosol	64.14	67.02
AT4G21470.1	Thale cress	cytosol	64.14	67.02
Zm00001d037045_P004	Maize	cytosol	88.13	52.56
EES03641	Sorghum	cytosol	36.87	39.67
EES13604	Sorghum	cytosol	20.2	32.79
KXG24804	Sorghum	plastid	20.96	28.33

Protein Annotations

KEGG:00740+2.7.1.26	Gene3D:1.10.150.240	Gene3D:2.40.30.30	Gene3D:3.40.50.1000	MapMan:7.10.8	EntrezGene:8061455
UniProt:C5X020	EnsemblPlants:EER92955	ProteinID:EER92955	ProteinID:EER92955.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0008531	GO:GO:0009058	GO:GO:0009231	GO:GO:0009987
GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0016787	InterPro:HAD-SF_hydro_IA	InterPro:HAD-like_sf
InterPro:HAD_sf	InterPro:IPR023198	InterPro:IPR023214	InterPro:IPR023465	PFAM:PF01687	PFAM:PF13419
InterPro:PGP-like_dom2	PRINTS:PR00413	PANTHER:PTHR22749	PANTHER:PTHR22749:SF1	MetaCyc:PWY-5523	MetaCyc:PWY-6168
InterPro:Riboflavin_kinase	InterPro:Riboflavin_kinase_bac/euk	InterPro:Riboflavin_kinase_dom_sf	SMART:SM00904	EnsemblPlantsGene:SORBI_3001G524500	SUPFAM:SSF56784
SUPFAM:SSF82114	TIGRFAMs:TIGR01509	UniParc:UPI0001A82D13	RefSeq:XP_002465957.1	:	:

Description

hypothetical protein

Coordinates

chr1:+:78906714..78917635

Molecular Weight (calculated)

43379.8 Da

IEP (calculated)

5.905

GRAVY (calculated)

-0.207

Length

396 amino acids

Sequence
(BLAST)

001: MSAPKPIYQL ISHVILDLDG TLLNTGSIVN KVVKTFLAKN GKTWDSKKAH KLVGKTPYEA AAVVLEDYGL PYSSEEFLSL ITPMLSEQWC NIKPLPGANR
101: LIKHLRSNGV PTALASNSPR SDIFAKISHQ GWKESFSAIV GGDEVEKGKP SPDIFLEAAK RMNATPSNCL VIEDSLPGVA AGKAAGMHVI AVPSVPKKTV
201: EFSSADEVID SLLELRPEKW GLPPFNDWIE GTLPIEPWFI GGPVIKGFGR GSKVLGIPTA NLPAENFADV VSEHTSGVYF GWAGLSTRGI YKMVMSIGWN
301: PYFDNTEKTV EPWLLHNFGE DFYGEELRLA IVGYIRPEAN FPSLESLIER IHEDGKIAEK ALDLPIYARY KDSPYLRNPL QQGSASDGSQ AEQNSK

Best Arabidopsis Sequence Match ( AT4G21470.1 )
(BLAST)

001: MSMSNSLKKL SSCVLIDLDG TLINTDGVVG DILRKYLCKY GKQWDGRESL KIVGKTPVEA ATTIVEDYEL PCKVDEFNSE FYPLFSAQMD KIKSLPGANR
101: LIRHLKCHGV PVALASNSSR ANIESKISYH EGWKECFSVI VGSDEVSKGK PSPDIFLEAA KRLKKDPADC LVIEDSVPGV MAGKAAGTKV IAVPSLPKQT
201: HLYTSADEVI NSLLDIRLEK WGLPPFQDWI ENTLPIDPWH IGGPVIKGFG RGSKVLGIPT ANLSTKDYAD ELVEHPSGVY FGWAGLAKRG VFKMVMSIGW
301: NPYFNNKEKT IEPWLLHDFT EDFYGEELRL IIVGYIRPEA NFSSLESLIA KIHEDREVAE KALDLPSYAK FKGDPYLTK

Arabidopsis Description

FHYFMN/FHY [Source:UniProtKB/TrEMBL;Acc:A0A178V341]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.