Factsheet for GSMUA_Achr1P03460_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

cytosol 3
plastid 1
mitochondrion 1
nucleus 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P04700_001
GSMUA_Achr1P14070_001
GSMUA_Achr1P27230_001
GSMUA_Achr2P12680_001
GSMUA_Achr3P25390_001
GSMUA_Achr4P22570_001
GSMUA_Achr5P09010_001
GSMUA_Achr6P24410_001
GSMUA_Achr7P01390_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G21470.1	GSMUA_Achr1P04700_001	AT4G14640.1	17360592
AT4G21470.1	GSMUA_Achr1P14070_001	AT4G14640.1	17360592
AT4G21470.1	GSMUA_Achr1P27230_001	AT4G14640.1	17360592
AT4G21470.1	GSMUA_Achr2P12680_001	AT4G14640.1	17360592
AT4G21470.1	GSMUA_Achr3P25390_001	AT4G14640.1	17360592
AT4G21470.1	GSMUA_Achr4P22570_001	AT4G14640.1	17360592
AT4G21470.1	GSMUA_Achr5P09010_001	AT4G14640.1	17360592
AT4G21470.1	GSMUA_Achr6P24410_001	AT4G14640.1	17360592
AT4G21470.1	GSMUA_Achr7P01390_001	AT4G14640.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P20490_001	Banana	cytosol	77.49	76.29
PGSC0003DMT400057721	Potato	cytosol	50.79	70.8
TraesCS1A01G146600.1	Wheat	cytosol	73.56	70.78
TraesCS1D01G144800.1	Wheat	cytosol	73.3	70.53
TraesCS1B01G164900.1	Wheat	cytosol	73.3	70.53
Os10t0464400-01	Rice	cytosol	73.04	70.28
EER92955	Sorghum	plastid	72.51	69.95
KRH41925	Soybean	cytosol	35.34	69.95
VIT_00s0181g00130.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	70.68	69.59
OQU91676	Sorghum	cytosol, nucleus, plastid	71.47	69.47
Solyc02g079100.2.1	Tomato	extracellular	68.06	67.53
VIT_00s0181g00140.t01	Wine grape	mitochondrion, plastid	70.94	67.41
KRH49951	Soybean	nucleus	66.49	67.37
CDX79065	Canola	cytosol	64.66	65.17
CDX82826	Canola	cytosol	64.14	64.64
AT4G21470.1	Thale cress	cytosol	63.35	63.85
Os10t0209300-00	Rice	cytosol	12.83	56.98
HORVU1Hr1G038850.2	Barley	plastid	72.51	56.76
Zm00001d037045_P004	Maize	cytosol	71.99	41.42
GSMUA_Achr4P10550_001	Banana	cytosol	40.31	40.31
GSMUA_Achr9P22850_001	Banana	mitochondrion	17.02	27.2

Protein Annotations

KEGG:00740+2.7.1.26	Gene3D:1.10.150.240	Gene3D:2.40.30.30	Gene3D:3.40.50.1000	MapMan:7.10.8	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0008531	GO:GO:0009058	GO:GO:0009231
GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr1G03460_001
EnsemblPlants:GSMUA_Achr1P03460_001	EnsemblPlants:GSMUA_Achr1T03460_001	InterPro:HAD-SF_hydro_IA	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023198
InterPro:IPR023214	InterPro:IPR023465	UniProt:M0RWQ4	PFAM:PF01687	PFAM:PF13419	InterPro:PGP-like_dom2
PRINTS:PR00413	ScanProsite:PS01228	PANTHER:PTHR22749	PANTHER:PTHR22749:SF1	InterPro:Riboflavin_kinase	InterPro:Riboflavin_kinase_bac/euk
InterPro:Riboflavin_kinase_dom_sf	SMART:SM00904	SUPFAM:SSF56784	SUPFAM:SSF82114	TIGRFAMs:TIGR01509	UniParc:UPI000296D3C7
SEG:seg	:	:	:	:	:

Description

Putative Riboflavin kinase [Source:GMGC_GENE;Acc:GSMUA_Achr1G03460_001]

Coordinates

chr1:-:2823679..2828639

Molecular Weight (calculated)

42433.5 Da

IEP (calculated)

4.795

GRAVY (calculated)

0.037

Length

382 amino acids

Sequence
(BLAST)

001: MADGKLATRT VSYVILDLDG TLLNTDGIVN EVLKVFLLQY GKKWDSKKAH RIVGMTPLEA VSLVVKDYEL PCTIEEFISA ITPMFLDQWC NIKALVGATR
101: LIKHMRNHEV PMALASNSPK SNIKEKISFD QGWKESFSVI IGGDEVAMGK PSPEIFVEAA IRMNADPSNC LVLEDSLPGV MAGKAAGMVV MAVPSIPKQG
201: GLYSSADEVI NSLLDLHPEK WGLLPFDDWI EDTLPIEPCY FGGPVIRGFG LGLKILGIPT ANLLAENFSA ILSEHNSGVY FGWAGLSTRG IYKMVMSIGW
301: NPYFDNTEKT IEPWLLHDFD ENFYGEELRL AMVGYIRPEA NFPSLESLIA RIHEDRRIVE KALDLPIYVG YKESPFLRTP CN

Best Arabidopsis Sequence Match ( AT4G21470.1 )
(BLAST)

001: MSMSNSLKKL SSCVLIDLDG TLINTDGVVG DILRKYLCKY GKQWDGRESL KIVGKTPVEA ATTIVEDYEL PCKVDEFNSE FYPLFSAQMD KIKSLPGANR
101: LIRHLKCHGV PVALASNSSR ANIESKISYH EGWKECFSVI VGSDEVSKGK PSPDIFLEAA KRLKKDPADC LVIEDSVPGV MAGKAAGTKV IAVPSLPKQT
201: HLYTSADEVI NSLLDIRLEK WGLPPFQDWI ENTLPIDPWH IGGPVIKGFG RGSKVLGIPT ANLSTKDYAD ELVEHPSGVY FGWAGLAKRG VFKMVMSIGW
301: NPYFNNKEKT IEPWLLHDFT EDFYGEELRL IIVGYIRPEA NFSSLESLIA KIHEDREVAE KALDLPSYAK FKGDPYLTK

Arabidopsis Description

FHYFMN/FHY [Source:UniProtKB/TrEMBL;Acc:A0A178V341]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.