CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
cytosol 2
plastid 1
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	peroxisome

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH31638
KRH69070

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G21470.1	KRH31638	AT4G14640.1	17360592
AT4G21470.1	KRH69070	AT4G14640.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41925	Soybean	cytosol	48.28	94.3
PGSC0003DMT400057721	Potato	cytosol	56.76	78.1
Solyc02g079100.2.1	Tomato	extracellular	76.39	74.81
VIT_00s0181g00130.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	76.66	74.48
AT4G21470.1	Thale cress	cytosol	73.21	72.82
VIT_00s0181g00140.t01	Wine grape	mitochondrion, plastid	77.19	72.39
CDX79065	Canola	cytosol	72.41	72.03
CDX82826	Canola	cytosol	72.15	71.77
GSMUA_Achr5P20490_001	Banana	cytosol	71.88	69.85
GSMUA_Achr1P03460_001	Banana	cytosol, nucleus, plasma membrane	67.37	66.49
TraesCS1A01G146600.1	Wheat	cytosol	69.5	66.0
Os10t0464400-01	Rice	cytosol	69.23	65.74
TraesCS1D01G144800.1	Wheat	cytosol	68.97	65.49
TraesCS1B01G164900.1	Wheat	cytosol	68.97	65.49
OQU91676	Sorghum	cytosol, nucleus, plastid	67.9	65.14
EER92955	Sorghum	plastid	67.9	64.65
HORVU1Hr1G038850.2	Barley	plastid	68.97	53.28
Os10t0209300-00	Rice	cytosol	11.67	51.16
KRH22289	Soybean	cytosol	38.2	39.56
KRH27040	Soybean	cytosol	37.93	39.18
Zm00001d037045_P004	Maize	cytosol	68.44	38.86
KRH19024	Soybean	nucleus	19.36	30.29

Protein Annotations

KEGG:00740+2.7.1.26	Gene3D:1.10.150.240	EntrezGene:100811525	Gene3D:2.40.30.30	Gene3D:3.40.50.1000	MapMan:7.10.8
EMBL:ACUP02004648	EnsemblPlantsGene:GLYMA_07G190300	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0008531	GO:GO:0009058	GO:GO:0009231	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310
GO:GO:0016740	GO:GO:0016787	InterPro:HAD-SF_hydro_IA	InterPro:HAD-like_sf	InterPro:HAD_sf	UniProt:I1KLD6
InterPro:IPR023198	InterPro:IPR023214	InterPro:IPR023465	EnsemblPlants:KRH49951	ProteinID:KRH49951	ProteinID:KRH49951.1
PFAM:PF01687	PFAM:PF13419	InterPro:PGP-like_dom2	PRINTS:PR00413	PANTHER:PTHR22749	PANTHER:PTHR22749:SF1
MetaCyc:PWY-5523	MetaCyc:PWY-6168	MetaCyc:PWY-7863	InterPro:Riboflavin_kinase	InterPro:Riboflavin_kinase_bac/euk	InterPro:Riboflavin_kinase_dom_sf
SMART:SM00904	SUPFAM:SSF56784	SUPFAM:SSF82114	TIGRFAMs:TIGR01509	UniParc:UPI0002337EE2	SEG:seg

Description

hypothetical protein

Coordinates

chr7:-:35812669..35816288

Molecular Weight (calculated)

41672.0 Da

IEP (calculated)

5.051

GRAVY (calculated)

-0.077

Length

377 amino acids

Sequence
(BLAST)

001: MSVAKKLIRC VILDLDGTLL NTDGIVGNVL KVMLGKYGKE WDGREAQKII GTTPFEAAAA VVQDYQLPCS AIEFLSEISP LFSDQWCNIK ALPGANRLVK
101: HLKSHGVPMA LASNSPRESI EAKISYHDGW KNSFSVIIGG DEVRTGKPSP EIFLEAARRL NMEPSSCLVI EDSLPGVTAG KTAEMEVVVV PSLPKQSHLY
201: TAADEVINSL LDLRLEKWGL PPFEDWVEGT LPVDPWYIGG PVVKGFGRGS KVLGIPTANL STEGYSDLLS EYPAGVYFGW AGLSARGVFK MVMSIGWNPY
301: FNNKEKAIEP WLLHDFNEDF YGEELRLVIV GYIRPEVNFS SLESLVAKIH EDRRVAERAL DLPLYSSFKN DSYLRSS

Best Arabidopsis Sequence Match ( AT4G21470.1 )
(BLAST)

001: MSMSNSLKKL SSCVLIDLDG TLINTDGVVG DILRKYLCKY GKQWDGRESL KIVGKTPVEA ATTIVEDYEL PCKVDEFNSE FYPLFSAQMD KIKSLPGANR
101: LIRHLKCHGV PVALASNSSR ANIESKISYH EGWKECFSVI VGSDEVSKGK PSPDIFLEAA KRLKKDPADC LVIEDSVPGV MAGKAAGTKV IAVPSLPKQT
201: HLYTSADEVI NSLLDIRLEK WGLPPFQDWI ENTLPIDPWH IGGPVIKGFG RGSKVLGIPT ANLSTKDYAD ELVEHPSGVY FGWAGLAKRG VFKMVMSIGW
301: NPYFNNKEKT IEPWLLHDFT EDFYGEELRL IIVGYIRPEA NFSSLESLIA KIHEDREVAE KALDLPSYAK FKGDPYLTK

Arabidopsis Description

FHYFMN/FHY [Source:UniProtKB/TrEMBL;Acc:A0A178V341]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.