CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400062819	Potato	mitochondrion	70.83	40.48
CDY38298	Canola	cytosol	78.33	39.5
CDY42775	Canola	mitochondrion	90.0	37.37
CDY42776	Canola	mitochondrion	90.0	37.37
CDX92735	Canola	mitochondrion	90.83	37.33
Solyc10g054280.1.1	Tomato	cytosol	71.67	34.96
KRH19024	Soybean	nucleus	69.17	34.44
VIT_11s0052g00860.t01	Wine grape	cytosol	65.83	33.76
AT4G25840.1	Thale cress	mitochondrion	83.33	33.56
TraesCS3D01G503200.1	Wheat	cytosol	65.0	31.97
TraesCS3A01G495800.1	Wheat	cytosol	64.17	31.82
GSMUA_Achr9P22850_001	Banana	mitochondrion	62.5	31.38
Os08t0243600-01	Rice	cytosol, nucleus	62.5	31.25
CDY25908	Canola	cytosol	72.5	31.18
EES13604	Sorghum	cytosol	61.67	30.33
TraesCS7D01G118300.1	Wheat	cytosol	61.67	30.2
Zm00001d024155_P001	Maize	cytosol	61.67	30.08
Zm00001d024413_P001	Maize	extracellular	66.67	28.88
TraesCS3B01G559400.1	Wheat	mitochondrion, plastid	64.17	27.21
TraesCS7B01G017100.1	Wheat	plastid	61.67	25.87
KXG24804	Sorghum	plastid	62.5	25.6
HORVU3Hr1G109780.2	Barley	cytosol	65.0	24.22
CDX82826	Canola	cytosol	27.5	8.71
CDX79065	Canola	cytosol	27.5	8.71

Protein Annotations

EnsemblPlants:CDY57289	EnsemblPlantsGene:GSBRNA2T00020762001	Gene3D:3.40.50.1000	GO:A0A078J220	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:HAD-SF_hydro_IA	InterPro:HAD-like_sf	InterPro:HAD_sf
InterPro:IPR023214	PANTHER:PTHR18901	PANTHER:PTHR18901:SF38	PFAM:PF13419	ProteinID:CDY57289	ProteinID:CDY57289.1
SUPFAM:SSF56784	TIGRFAMs:TIGR01509	UniParc:UPI0004EC5FCA	UniProt:A0A078J220	MapMan:35.1	:

Description

BnaC06g41250DBnaC06g41250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J220]

Coordinates

chrLK033561:+:34656..35208

Molecular Weight (calculated)

13613.1 Da

IEP (calculated)

5.172

GRAVY (calculated)

-0.536

Length

120 amino acids

Sequence
(BLAST)

001: MQYARHFDLK TQRHIELFSW MHHIVRGNDP EVKQGKPAPD GFFAAARRFE DGPVDPRKAL LFEDAPSGVM AAKNTGMNVI MVPDPRLDKS YCDVADQVLA
101: SLLDFKPEEW GLPPFEDSQN

Best Arabidopsis Sequence Match ( AT4G25840.1 )
(BLAST)

001: MLTTPTRFVA LRIPFRSSNK IPISIAPSPK VFPRKPVIRV PASLRFVATM STPAAAVNAT VTVTDAGRGS ITHVIFDMDG LLLDTEKFYT EVQEKILARY
101: NKTFDWSLKA KMMGRKAIEA ARLFVDESGI SDSLSAEDFI VERESMLQDL FPTSDLMPGA SRLLRHLHGK GIPICIATGT HTRHFDLKTQ RHRELFSLMH
201: HVVRGDDPEV KEGKPAPDGF LAASRRFEDG PVDPRKVLVF EDAPSGVQAA KNAGMNVIMV PDSRLDKSYC NVADQVLASL LDFKPEEWGL PSFQDSHN

Arabidopsis Description

GPP1(DL)-glycerol-3-phosphatase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4JTE7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.