Factsheet for Solyc10g054280.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
nucleus 1
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0052g00860.t01	Wine grape	cytosol	77.24	81.2
Bra002728.1-P	Field mustard	cytosol	76.83	79.41
CDY38298	Canola	cytosol	76.83	79.41
Bra019139.1-P	Field mustard	cytosol	76.83	77.46
AT5G57440.1	Thale cress	cytosol	74.39	76.25
KRH19024	Soybean	nucleus	72.76	74.27
CDY57289	Canola	cytosol	34.96	71.67
PGSC0003DMT400062819	Potato	mitochondrion	58.13	68.1
TraesCS3A01G495800.1	Wheat	cytosol	66.26	67.36
TraesCS3D01G503200.1	Wheat	cytosol	66.67	67.21
Os08t0243600-01	Rice	cytosol, nucleus	65.45	67.08
CDY25908	Canola	cytosol	75.2	66.31
CDY42775	Canola	mitochondrion	77.24	65.74
CDY42776	Canola	mitochondrion	77.24	65.74
CDX92735	Canola	mitochondrion	77.24	65.07
GSMUA_Achr9P22850_001	Banana	mitochondrion	62.2	64.02
AT4G25840.1	Thale cress	mitochondrion	76.42	63.09
TraesCS7D01G118300.1	Wheat	cytosol	62.6	62.86
EES13604	Sorghum	cytosol	62.2	62.7
Zm00001d024155_P001	Maize	cytosol	60.57	60.57
Zm00001d024413_P001	Maize	extracellular	67.48	59.93
TraesCS3B01G559400.1	Wheat	mitochondrion, plastid	65.85	57.24
KXG24804	Sorghum	plastid	64.63	54.27
TraesCS7B01G017100.1	Wheat	plastid	63.01	54.2
HORVU3Hr1G109780.2	Barley	cytosol	66.26	50.62
Solyc02g079100.2.1	Tomato	extracellular	31.3	20.0
Solyc07g053270.2.1	Tomato	cytosol	30.08	19.32

Protein Annotations

Gene3D:1.10.150.240	Gene3D:3.40.50.1000	MapMan:5.7.4.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0006114	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016311	GO:GO:0016787	GO:GO:0043136
InterPro:HAD-SF_hydro_IA	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023198	InterPro:IPR023214	UniProt:K4D126
PFAM:PF13419	InterPro:PGP-like_dom2	PANTHER:PTHR18901	PANTHER:PTHR18901:SF38	SUPFAM:SSF56784	EnsemblPlantsGene:Solyc10g054280.1
EnsemblPlants:Solyc10g054280.1.1	TIGRFAMs:TIGR01509	UniParc:UPI000276A9F3	:	:	:

Description

No Description!

Coordinates

chr10:-:55186337..55197880

Molecular Weight (calculated)

27354.6 Da

IEP (calculated)

5.146

GRAVY (calculated)

-0.243

Length

246 amino acids

Sequence
(BLAST)

001: MANQGIDTSS ARKGSITHVI FDMDGLLLDT EKFYTEVQEI ILARYNKTFD WSLKAKMMGK KAIEAARVFV EETGISDSLT AEDFLVEREE MLQKMFPTSD
101: LMPGASRLIH HLHENGIPIC VATGTHTRHF DLKTQRHSEL FSLMHHIVRG DDPEVKQGKP SPDIFLAAAN RFEGGTVDPQ RILVFEDAPS GVLAAKNAGM
201: SVVMVPDARL DSQYHQVADQ VLNSLLDFSP ADWGLPPFEN ASTKLD

Best Arabidopsis Sequence Match ( AT4G25840.1 )
(BLAST)

001: MLTTPTRFVA LRIPFRSSNK IPISIAPSPK VFPRKPVIRV PASLRFVATM STPAAAVNAT VTVTDAGRGS ITHVIFDMDG LLLDTEKFYT EVQEKILARY
101: NKTFDWSLKA KMMGRKAIEA ARLFVDESGI SDSLSAEDFI VERESMLQDL FPTSDLMPGA SRLLRHLHGK GIPICIATGT HTRHFDLKTQ RHRELFSLMH
201: HVVRGDDPEV KEGKPAPDGF LAASRRFEDG PVDPRKVLVF EDAPSGVQAA KNAGMNVIMV PDSRLDKSYC NVADQVLASL LDFKPEEWGL PSFQDSHN

Arabidopsis Description

GPP1(DL)-glycerol-3-phosphatase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4JTE7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.