Factsheet for PGSC0003DMT400054224

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400034833
PGSC0003DMT400042062

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51170.1	PGSC0003DMT400034833	AT4G14640.1	17360592
AT1G51170.1	PGSC0003DMT400042062	AT4G14640.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g061720.1.1	Tomato	cytosol	87.14	89.3
KRH23156	Soybean	cytosol	57.04	60.88
VIT_06s0004g01780.t01	Wine grape	cytosol	60.44	60.73
Bra018898.1-P	Field mustard	cytosol	41.99	60.28
CDY25216	Canola	cytosol	53.88	58.42
CDY22830	Canola	cytosol, plastid	53.64	58.16
KRH29689	Soybean	cytosol	57.52	57.66
KRH24685	Soybean	cytosol	58.5	57.52
GSMUA_Achr5P22330_001	Banana	cytosol	43.45	57.01
AT3G20830.1	Thale cress	cytosol, plastid	55.34	55.88
AT1G51170.1	Thale cress	plastid	54.61	55.69
CDY06386	Canola	nucleus, plastid	54.13	55.61
CDY19600	Canola	plastid	54.37	55.58
Bra035740.1-P	Field mustard	plastid	54.13	55.34
GSMUA_Achr7P02080_001	Banana	cytosol, mitochondrion	47.57	49.49
Os08t0504800-01	Rice	cytosol	50.0	48.7
EER99080	Sorghum	cytosol, nucleus, peroxisome	50.73	47.72
TraesCS7A01G244900.1	Wheat	cytosol	49.76	47.67
TraesCS7D01G243600.1	Wheat	cytosol	49.27	47.54
TraesCS7B01G146500.1	Wheat	cytosol	49.27	47.43
TraesCS5A01G263600.1	Wheat	cytosol	50.49	47.38
Zm00001d020927_P001	Maize	cytosol	50.49	47.27
TraesCS5B01G263000.1	Wheat	cytosol	50.49	47.27
EES15407	Sorghum	cytosol	50.24	46.73
Zm00001d031426_P001	Maize	cytosol	49.76	46.38
Zm00001d006017_P001	Maize	cytosol	49.03	46.12
Os09t0486700-01	Rice	cytosol	50.49	45.71
TraesCS5D01G271200.1	Wheat	cytosol	50.73	44.66
HORVU5Hr1G072930.1	Barley	mitochondrion	49.27	43.66
HORVU7Hr1G050240.1	Barley	mitochondrion	49.03	42.98
TraesCS5A01G192800.1	Wheat	cytosol	13.59	41.48
TraesCS7A01G426500.1	Wheat	cytosol	13.35	41.04
PGSC0003DMT400016996	Potato	cytosol, plastid	40.53	40.14
PGSC0003DMT400015050	Potato	cytosol	16.26	32.21
PGSC0003DMT400065251	Potato	cytosol	36.16	14.59

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:102587402	MapMan:18.4.6.5	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	UniProt:M1BVZ9	PFAM:PF00069	EnsemblPlantsGene:PGSC0003DMG400021034
PGSC:PGSC0003DMG400021034	EnsemblPlants:PGSC0003DMT400054224	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24351
PANTHER:PTHR24351:SF107	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS
UniParc:UPI0002960812	RefSeq:XP_006354264.1	SEG:seg	:	:	:

Description

Serine/threonine protein kinase [Source:PGSC_GENE;Acc:PGSC0003DMG400021034]

Coordinates

chr11:-:33926400..33927939

Molecular Weight (calculated)

47143.5 Da

IEP (calculated)

9.320

GRAVY (calculated)

-0.388

Length

412 amino acids

Sequence
(BLAST)

001: MDIPLSSSLT LNNLRVIKVL GKGAMGTVFL VHDMFHDPSA LSPFALKAVE KSNFSSNAIH RRARWETTVL SRLQHPFLPT LLGFTENSDF LCYAVPYCPG
101: GDLNVLRYSQ SDHVFSPTAI RFYLAEIVLA LEYLHSLGIA YRDLKPENVL VQQSGHVTLT DFDLSTSLTP KKNLEFYSDP ENDNLQPPPP PTQPQTFKFR
201: QFAKFILPNK TKCISNTATI TRNGLRKVKS ARVSPVSRRN RSSFYERSNS FVGTEEYVAP EIVRGEGHEF SVDWWALGIL CYEMLYGTTP FKGKNRKETF
301: RRILMAEPEF IGKKNDLSDL IKKLLEKDPT RRLGYRRGAS EIKEHEFFQG MRWDLLTEVV RPPFLPLRDV TEEVKKGGIN ITEYFQKLKA PPSPLWSPSH
401: DEWTNNISLT EF

Best Arabidopsis Sequence Match ( AT3G20830.1 )
(BLAST)

001: MEPSPSSPPS SPPEILDLDS IKALKILGKG ATGTVFLAHD VVSTSSSSSP FAVKLVPKSS ASSLRRARWE IEVLRRLSVD SNQNPFLPRL LASFESPEYF
101: AWAVPYCSGG DLNVLLHRQN DGVFSSSVIR FYVAEIVCAL EHLHTMGIAY RDLKPENILI QQSGHVTLTD FDLSRSLKKP LRPHFYQPDP ELIIDRKKSR
201: SFSRLISPTA EKNKTGLKKT RSARVNPINR RKTSFSSGER SNSFVGTDEY VSPEVIRGDG HDFAVDWWAL GVLTYEMMYG ETPFKGKSKK ETFRNVLMKE
301: PEFAGKPNDL TDLIRRLLVK DPNRRLGCHR GAAEIKELAF FAGVRWDLLT EVLRPPFIPL RDDGELTVGG FDIREHFEKL RTTPSSAPPS PLRSPPHVCR
401: KNDPFIEF

Arabidopsis Description

UCNLSerine/threonine-protein kinase UCNL [Source:UniProtKB/Swiss-Prot;Acc:Q9LT38]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.