Factsheet for PGSC0003DMT400065251

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g072710.1.1	Tomato	plastid	96.87	97.25
VIT_06s0004g03700.t01	Wine grape	cytosol, plastid	73.85	75.1
KRH24973	Soybean	cytosol	70.03	73.18
CDY30927	Canola	cytosol	66.8	72.86
KRH22966	Soybean	nucleus, plastid	69.54	72.3
GSMUA_Achr4P30620_001	Banana	cytosol	65.23	71.92
AT3G45780.2	Thale cress	cytosol	70.13	71.89
CDX77857	Canola	cytosol	51.32	71.88
KRH10351	Soybean	nucleus, plastid	67.48	71.62
Bra019474.1-P	Field mustard	nucleus, plastid	67.09	71.13
Os12t0101800-02	Rice	mitochondrion	44.96	68.71
EES15492	Sorghum	cytosol	61.21	68.46
Zm00001d044599_P001	Maize	cytosol, nucleus, plastid	60.92	68.28
GSMUA_Achr7P10360_001	Banana	cytosol	63.86	67.85
HORVU5Hr1G049160.8	Barley	cytosol	60.92	67.68
TraesCS5D01G162400.1	Wheat	cytosol	60.72	67.03
TraesCS5A01G157000.1	Wheat	cytosol	60.24	66.85
Os11t0102200-00	Rice	cytosol, plasma membrane, plastid	59.75	66.23
TraesCS5B01G155200.4	Wheat	cytosol	60.92	65.06
PGSC0003DMT400015050	Potato	cytosol	7.64	37.5
PGSC0003DMT400054224	Potato	cytosol	14.59	36.16
PGSC0003DMT400016996	Potato	cytosol, plastid	13.32	32.69

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:102603264	MapMan:18.4.6.5	MapMan:20.5.1	MapMan:26.1.2.2.1	Gene3D:3.30.200.20
Gene3D:3.30.450.20	ProteinID:AFW90587	ProteinID:AFW90587.1	GO:GO:0000155	GO:GO:0000160	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004871	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009785	GO:GO:0009987
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0023014	GO:GO:0038023	InterPro:IPR000014
InterPro:IPR000700	InterPro:IPR000719	EMBL:JX576231	InterPro:Kinase-like_dom_sf	UniProt:M1CDM5	InterPro:PAC
InterPro:PAS	InterPro:PAS-assoc_C	InterPro:PAS-like_dom_sf	PFAM:PF00069	PFAM:PF13426	EnsemblPlantsGene:PGSC0003DMG400025361
PGSC:PGSC0003DMG400025361	EnsemblPlants:PGSC0003DMT400065251	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PFscan:PS50112
PFscan:PS50113	PANTHER:PTHR24351	PANTHER:PTHR24351:SF173	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00086
SMART:SM00091	SMART:SM00220	SUPFAM:SSF55785	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	TIGRFAMs:TIGR00229
UniParc:UPI00029602CD	RefSeq:XP_006365149.2	SEG:seg	:	:	:

Description

Phototropin-1 [Source:PGSC_GENE;Acc:PGSC0003DMG400025361]

Coordinates

chr11:+:44678705..44689497

Molecular Weight (calculated)

114657.0 Da

IEP (calculated)

7.149

GRAVY (calculated)

-0.687

Length

1021 amino acids

Sequence
(BLAST)

0001: MEEENKQSPL IPPLPRDPRG SLEVFNPSTY SSRSTNPVFR SQSSWKNWTG GESITGSTIP EIEEKPEQIA IPKSSNENEE IVTSWMAIAP ASAKLTSPIT
0101: QKSITGGEKV NSKAAVDEVG AAAQRAAEWG LVLKTDDETG KLQGVKVRTS GDDANGKTET SRRDSGNSGR SSGEFSDDGA GKERGIPRVS EDLRDALSTF
0201: QQTFVVSDAT KPDYPILYAS AGFFKMTGYT SKEVIGRNCR FMQGSGTDPE DVAKIREALQ TGSTYCGRLL NYKKDGTPFW NLLTIAPIKD DAGKVLKFIG
0301: MQVEVSKHTE GSKEKTVRPN GLPESLIRYD VRQKEMANNS VNELLKEIKH PRRARALSES TNNRPTFMRK SEGDQVEQDK QDVGITTHKL NLVNKAPARR
0401: HSHAGTRTTA MKMEKINEDP EKKPKKSARL SFMGIMKKKR SSTTMTTDDD DFEARMTMDN DDDDDDESDN DGRPVSVDDK VRKKEMRKGI DLATTLERIE
0501: KNFVITDPRL PDNPIIFASD SFLELTEYSR EEILGRNCRF LQGPETDPAT VKKIRQAIDN QTDVTVQLIN YTKTGKKFWN LFHLQPMRDQ KGEVQYFIGV
0601: QLDGSQHVEP LHNSIPEDKA TESAKLIKET AGNVDEAVRE LPDANSKPED LWRNHSKVVQ PKPHRKDSPS WKAIQKIMES GEPISLKHFK PIKPLGSGDT
0701: GSVHLVELCG TDQHFAMKAM DKSIMLNRNK VHRACAEREI LDMLDHPFLP ALYASFQTKT HICLITDYYP GGELFMLLDR QQTKVLKEDA ARFYAAEVVI
0801: ALEYLHCQGI IYRDLKPENV LLQSGGHVSL TDFDLSCLTS CKPQLLVPEI NEKKKHQKGQ QNPIFMAEPM RASNSFVGTE EYIAPEIITG AGHTSAVDWW
0901: ALGILLFEML YGYTPFRGKT RQKTFSNILH KDLKFPGSIQ SSLHAKQLMY RLLHRDPKNR LGSREGANEI KQHPFFRGVN WALIRCMNPP KLDSAPFLGT
1001: EAEKEGNDIN PEMEDLQTNV F

Best Arabidopsis Sequence Match ( AT3G45780.1 )
(BLAST)

001: MEPTEKPSTK PSSRTLPRDT RGSLEVFNPS TQLTRPDNPV FRPEPPAWQN LSDPRGTSPQ PRPQQEPAPS NPVRSDQEIA VTTSWMALKD PSPETISKKT
101: ITAEKPQKSA VAAEQRAAEW GLVLKTDTKT GKPQGVGVRN SGGTENDPNG KKTTSQRNSQ NSCRSSGEMS DGDVPGGRSG IPRVSEDLKD ALSTFQQTFV
201: VSDATKPDYP IMYASAGFFN MTGYTSKEVV GRNCRFLQGS GTDADELAKI RETLAAGNNY CGRILNYKKD GTSFWNLLTI APIKDESGKV LKFIGMQVEV
301: SKHTEGAKEK ALRPNGLPES LIRYDARQKD MATNSVTELV EAVKRPRALS ESTNLHPFMT KSESDELPKK PARRMSENVV PSGRRNSGGG RRNSMQRINE
401: IPEKKSRKSS LSFMGIKKKS ESLDESIDDG FIEYGEEDDE ISDRDERPES VDDKVRQKEM RKGIDLATTL ERIEKNFVIT DPRLPDNPII FASDSFLELT
501: EYSREEILGR NCRFLQGPET DLTTVKKIRN AIDNQTEVTV QLINYTKSGK KFWNIFHLQP MRDQKGEVQY FIGVQLDGSK HVEPVRNVIE ETAVKEGEDL
601: VKKTAVNIDE AVRELPDANM TPEDLWANHS KVVHCKPHRK DSPPWIAIQK VLESGEPIGL KHFKPVKPLG SGDTGSVHLV ELVGTDQLFA MKAMDKAVML
701: NRNKVHRARA EREILDLLDH PFLPALYASF QTKTHICLIT DYYPGGELFM LLDRQPRKVL KEDAVRFYAA QVVVALEYLH CQGIIYRDLK PENVLIQGNG
801: DISLSDFDLS CLTSCKPQLL IPSIDEKKKK KQQKSQQTPI FMAEPMRASN SFVGTEEYIA PEIISGAGHT SAVDWWALGI LMYEMLYGYT PFRGKTRQKT
901: FTNVLQKDLK FPASIPASLQ VKQLIFRLLQ RDPKKRLGCF EGANEVKQHS FFKGINWALI RCTNPPELET PIFSGEAENG EKVVDPELED LQTNVF

Arabidopsis Description

PHOT1RPT1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFT4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.