Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- cytosol 3
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plastid:
22908117
plastid: 26371478 nucleus: 28394025 extracellular: 29876421 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
22908117
doi
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID:
26371478
doi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400065251 | Potato | cytosol | 97.25 | 96.87 |
| VIT_06s0004g03700.t01 | Wine grape | cytosol, plastid | 74.43 | 75.4 |
| KRH24973 | Soybean | cytosol | 70.6 | 73.49 |
| CDY30927 | Canola | cytosol | 67.06 | 72.86 |
| GSMUA_Achr4P30620_001 | Banana | cytosol | 66.08 | 72.57 |
| KRH22966 | Soybean | nucleus, plastid | 69.91 | 72.4 |
| AT3G45780.2 | Thale cress | cytosol | 70.89 | 72.39 |
| CDX77857 | Canola | cytosol | 51.62 | 72.02 |
| KRH10351 | Soybean | nucleus, plastid | 67.94 | 71.83 |
| Bra019474.1-P | Field mustard | nucleus, plastid | 67.55 | 71.34 |
| Os12t0101800-02 | Rice | mitochondrion | 45.72 | 69.61 |
| Zm00001d044599_P001 | Maize | cytosol, nucleus, plastid | 61.36 | 68.5 |
| GSMUA_Achr7P10360_001 | Banana | cytosol | 64.7 | 68.47 |
| EES15492 | Sorghum | cytosol | 61.46 | 68.46 |
| HORVU5Hr1G049160.8 | Barley | cytosol | 61.16 | 67.68 |
| TraesCS5D01G162400.1 | Wheat | cytosol | 60.96 | 67.03 |
| Os11t0102200-00 | Rice | cytosol, plasma membrane, plastid | 60.57 | 66.88 |
| TraesCS5A01G157000.1 | Wheat | cytosol | 60.47 | 66.85 |
| TraesCS5B01G155200.4 | Wheat | cytosol | 61.16 | 65.06 |
| Solyc01g097770.2.1 | Tomato | plastid | 53.49 | 56.96 |
| Solyc11g061720.1.1 | Tomato | cytosol | 14.95 | 37.81 |
| Solyc09g056430.2.1 | Tomato | cytosol | 13.37 | 34.34 |
Protein Annotations
Description
No Description!
Coordinates
chr11:+:55908596..55918351
Molecular Weight (calculated)
114251.0 Da
IEP (calculated)
7.130
GRAVY (calculated)
-0.698
Length
1017 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEEENKQSPL IPPLPRDPRG SLEVFNPSTY SSRSTNPVFR SQPSWKNWTA ADPITSSTIP ETEEKTEQIA IPKSSNENEQ IATSWMAIAP ASTKLASPIT
0101: QKSITGGEKV NSKAAVDEVG AAAQRAAEWG LVLKTDDETG KLQGVKVRTS GDDTNGKTET SRRDSGNSGR SSGEFSDDGA GKERGIPRVS EDLRDALSTF
0201: QQTFVVSDAT KPDYPILYAS AGFFKMTGYT SKEVIGRNCR FMQGSGTDPE DVATIREALQ SGSTYCGRLL NYKKDGTPFW NLLTIAPIKD DAGKVLKFIG
0301: MQVEVSKHTE GSKEKTVRPN GLPESLIRYD VRQKEMASNS VNELLEEIKN PRRARALSES TNNRPTFMRK SEGDQVEQDK QDTHKLNLVN KAPARRHSHA
0401: GTRTTTMKME KINEVPEKKP KKSARLSFMG IMKKKRSSTT MTTDDDDFEA RMTMDNDDDD DDESDNDGRP VSVDDKVRKK EMRKGIDLAT TLERIEKNFV
0501: ITDPRLPDNP IIFASDSFLE LTEYSREEIL GRNCRFLQGP ETDPATVKKI RQAIDNQTDV TVQLINYTKT GKKFWNLFHL QPMRDQKGEV QYFIGVQLDG
0601: SQHVEPLQNS IPEDKATESA KLIKETAGNV DEAVRELPDA NSKPEDLWRN HSKVVQPKPH RKDSPSWKAI QKILESGEPI GLKHFKPIKP LGSGDTGSVH
0701: LVELCGTDQH FAMKAMDKSI MLNRNKVHRA CAEREILDML DHPFLPALYA SFQTKTHICL ITDYYPGGEL FMLLDRQQTK VLKEDAARFY AAEVVVALEY
0801: LHCQGIIYRD LKPENVLLQS GGHVSLTDFD LSCLTSCKPQ LLVPEINEKK KHQKGQHNPI FMAEPMRASN SFVGTEEYIA PEIITGAGHT SAVDWWALGI
0901: LLYEMLYGYT PFRGKTRQKT FSNILHKDLK FPGSIQSSLH AKQLMYRLLH RDPKNRLGSR EGANEIKQHP FFRGVNWALI RCMNPPKLDS APFLGTESEK
1001: EGKDINPEME DLQTNVF
0101: QKSITGGEKV NSKAAVDEVG AAAQRAAEWG LVLKTDDETG KLQGVKVRTS GDDTNGKTET SRRDSGNSGR SSGEFSDDGA GKERGIPRVS EDLRDALSTF
0201: QQTFVVSDAT KPDYPILYAS AGFFKMTGYT SKEVIGRNCR FMQGSGTDPE DVATIREALQ SGSTYCGRLL NYKKDGTPFW NLLTIAPIKD DAGKVLKFIG
0301: MQVEVSKHTE GSKEKTVRPN GLPESLIRYD VRQKEMASNS VNELLEEIKN PRRARALSES TNNRPTFMRK SEGDQVEQDK QDTHKLNLVN KAPARRHSHA
0401: GTRTTTMKME KINEVPEKKP KKSARLSFMG IMKKKRSSTT MTTDDDDFEA RMTMDNDDDD DDESDNDGRP VSVDDKVRKK EMRKGIDLAT TLERIEKNFV
0501: ITDPRLPDNP IIFASDSFLE LTEYSREEIL GRNCRFLQGP ETDPATVKKI RQAIDNQTDV TVQLINYTKT GKKFWNLFHL QPMRDQKGEV QYFIGVQLDG
0601: SQHVEPLQNS IPEDKATESA KLIKETAGNV DEAVRELPDA NSKPEDLWRN HSKVVQPKPH RKDSPSWKAI QKILESGEPI GLKHFKPIKP LGSGDTGSVH
0701: LVELCGTDQH FAMKAMDKSI MLNRNKVHRA CAEREILDML DHPFLPALYA SFQTKTHICL ITDYYPGGEL FMLLDRQQTK VLKEDAARFY AAEVVVALEY
0801: LHCQGIIYRD LKPENVLLQS GGHVSLTDFD LSCLTSCKPQ LLVPEINEKK KHQKGQHNPI FMAEPMRASN SFVGTEEYIA PEIITGAGHT SAVDWWALGI
0901: LLYEMLYGYT PFRGKTRQKT FSNILHKDLK FPGSIQSSLH AKQLMYRLLH RDPKNRLGSR EGANEIKQHP FFRGVNWALI RCMNPPKLDS APFLGTESEK
1001: EGKDINPEME DLQTNVF
001: MEPTEKPSTK PSSRTLPRDT RGSLEVFNPS TQLTRPDNPV FRPEPPAWQN LSDPRGTSPQ PRPQQEPAPS NPVRSDQEIA VTTSWMALKD PSPETISKKT
101: ITAEKPQKSA VAAEQRAAEW GLVLKTDTKT GKPQGVGVRN SGGTENDPNG KKTTSQRNSQ NSCRSSGEMS DGDVPGGRSG IPRVSEDLKD ALSTFQQTFV
201: VSDATKPDYP IMYASAGFFN MTGYTSKEVV GRNCRFLQGS GTDADELAKI RETLAAGNNY CGRILNYKKD GTSFWNLLTI APIKDESGKV LKFIGMQVEV
301: SKHTEGAKEK ALRPNGLPES LIRYDARQKD MATNSVTELV EAVKRPRALS ESTNLHPFMT KSESDELPKK PARRMSENVV PSGRRNSGGG RRNSMQRINE
401: IPEKKSRKSS LSFMGIKKKS ESLDESIDDG FIEYGEEDDE ISDRDERPES VDDKVRQKEM RKGIDLATTL ERIEKNFVIT DPRLPDNPII FASDSFLELT
501: EYSREEILGR NCRFLQGPET DLTTVKKIRN AIDNQTEVTV QLINYTKSGK KFWNIFHLQP MRDQKGEVQY FIGVQLDGSK HVEPVRNVIE ETAVKEGEDL
601: VKKTAVNIDE AVRELPDANM TPEDLWANHS KVVHCKPHRK DSPPWIAIQK VLESGEPIGL KHFKPVKPLG SGDTGSVHLV ELVGTDQLFA MKAMDKAVML
701: NRNKVHRARA EREILDLLDH PFLPALYASF QTKTHICLIT DYYPGGELFM LLDRQPRKVL KEDAVRFYAA QVVVALEYLH CQGIIYRDLK PENVLIQGNG
801: DISLSDFDLS CLTSCKPQLL IPSIDEKKKK KQQKSQQTPI FMAEPMRASN SFVGTEEYIA PEIISGAGHT SAVDWWALGI LMYEMLYGYT PFRGKTRQKT
901: FTNVLQKDLK FPASIPASLQ VKQLIFRLLQ RDPKKRLGCF EGANEVKQHS FFKGINWALI RCTNPPELET PIFSGEAENG EKVVDPELED LQTNVF
101: ITAEKPQKSA VAAEQRAAEW GLVLKTDTKT GKPQGVGVRN SGGTENDPNG KKTTSQRNSQ NSCRSSGEMS DGDVPGGRSG IPRVSEDLKD ALSTFQQTFV
201: VSDATKPDYP IMYASAGFFN MTGYTSKEVV GRNCRFLQGS GTDADELAKI RETLAAGNNY CGRILNYKKD GTSFWNLLTI APIKDESGKV LKFIGMQVEV
301: SKHTEGAKEK ALRPNGLPES LIRYDARQKD MATNSVTELV EAVKRPRALS ESTNLHPFMT KSESDELPKK PARRMSENVV PSGRRNSGGG RRNSMQRINE
401: IPEKKSRKSS LSFMGIKKKS ESLDESIDDG FIEYGEEDDE ISDRDERPES VDDKVRQKEM RKGIDLATTL ERIEKNFVIT DPRLPDNPII FASDSFLELT
501: EYSREEILGR NCRFLQGPET DLTTVKKIRN AIDNQTEVTV QLINYTKSGK KFWNIFHLQP MRDQKGEVQY FIGVQLDGSK HVEPVRNVIE ETAVKEGEDL
601: VKKTAVNIDE AVRELPDANM TPEDLWANHS KVVHCKPHRK DSPPWIAIQK VLESGEPIGL KHFKPVKPLG SGDTGSVHLV ELVGTDQLFA MKAMDKAVML
701: NRNKVHRARA EREILDLLDH PFLPALYASF QTKTHICLIT DYYPGGELFM LLDRQPRKVL KEDAVRFYAA QVVVALEYLH CQGIIYRDLK PENVLIQGNG
801: DISLSDFDLS CLTSCKPQLL IPSIDEKKKK KQQKSQQTPI FMAEPMRASN SFVGTEEYIA PEIISGAGHT SAVDWWALGI LMYEMLYGYT PFRGKTRQKT
901: FTNVLQKDLK FPASIPASLQ VKQLIFRLLQ RDPKKRLGCF EGANEVKQHS FFKGINWALI RCTNPPELET PIFSGEAENG EKVVDPELED LQTNVF
Arabidopsis Description
PHOT1RPT1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFT4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.