Factsheet for Solyc01g097770.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
cytosol 4
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45318	Soybean	cytosol	14.66	77.78
Bra002669.1-P	Field mustard	cytosol	66.91	72.45
CDY62690	Canola	cytosol	69.01	72.1
Bra020388.1-P	Field mustard	cytosol	66.49	72.08
CDY43878	Canola	cytosol	68.9	72.07
Os04t0304200-01	Rice	plasma membrane	58.12	71.98
AT5G58140.2	Thale cress	cytosol	68.8	71.8
CDY32722	Canola	cytosol	68.38	71.06
CDY02797	Canola	cytosol	68.17	70.92
CDY58574	Canola	cytosol	68.17	70.76
VIT_03s0038g04210.t01	Wine grape	cytosol	73.93	70.53
CDX88659	Canola	cytosol	67.96	70.24
Bra006782.1-P	Field mustard	cytosol	65.65	69.51
KRH07591	Soybean	cytosol	71.83	69.29
GSMUA_Achr8P25430_001	Banana	cytosol	66.18	67.81
TraesCS2B01G290500.1	Wheat	cytosol	63.46	67.79
TraesCS2D01G271600.1	Wheat	cytosol	63.35	67.67
TraesCS2A01G272400.1	Wheat	cytosol	62.83	67.34
KRH45326	Soybean	cytosol	57.17	66.91
EES14872	Sorghum	cytosol	61.88	66.4
Zm00001d032353_P001	Maize	cytosol	61.15	62.66
Solyc11g072710.1.1	Tomato	plastid	56.96	53.49
Solyc11g061720.1.1	Tomato	cytosol	15.39	36.57
Solyc09g056430.2.1	Tomato	cytosol	13.72	33.08

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.6.5	MapMan:20.5.1	MapMan:26.1.2.2.1	Gene3D:3.30.200.20	Gene3D:3.30.450.20
GO:GO:0000155	GO:GO:0000160	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0004674	GO:GO:0004871	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005794	GO:GO:0005886
GO:GO:0006464	GO:GO:0006468	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0007623
GO:GO:0008150	GO:GO:0008152	GO:GO:0009605	GO:GO:0009606	GO:GO:0009628	GO:GO:0009637
GO:GO:0009638	GO:GO:0009719	GO:GO:0009735	GO:GO:0009785	GO:GO:0009882	GO:GO:0009987
GO:GO:0010118	GO:GO:0010181	GO:GO:0010362	GO:GO:0016020	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	GO:GO:0023014	GO:GO:0035556	GO:GO:0038023	GO:GO:0042802	InterPro:IPR000014
InterPro:IPR000700	InterPro:IPR000719	UniProt:K4B0G4	InterPro:Kinase-like_dom_sf	InterPro:PAC	InterPro:PAS
InterPro:PAS-assoc_C	InterPro:PAS-like_dom_sf	PFAM:PF00069	PFAM:PF13426	ScanProsite:PS00108	PFscan:PS50011
PFscan:PS50112	PFscan:PS50113	PANTHER:PTHR24351	PANTHER:PTHR24351:SF173	InterPro:Prot_kinase_dom	SMART:SM00086
SMART:SM00091	SMART:SM00220	SUPFAM:SSF55785	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	EnsemblPlantsGene:Solyc01g097770.2
EnsemblPlants:Solyc01g097770.2.1	TIGRFAMs:TIGR00229	UniParc:UPI000276820C	SEG:seg	:	:

Description

Phototropin-2 [Source:Projected from Arabidopsis thaliana (AT5G58140) UniProtKB/Swiss-Prot;Acc:P93025]

Coordinates

chr1:-:88479273..88492016

Molecular Weight (calculated)

106705.0 Da

IEP (calculated)

7.326

GRAVY (calculated)

-0.549

Length

955 amino acids

Sequence
(BLAST)

001: MENQRRSIDV FDPASTHDGA NLASSSRNEG IDVQEISVKG AESASRTGTD KLINKWMAFD LKGNDQNDNA DSQIPGETSI SERAAEWGLT VRTDVGEGSF
101: HAISRSGQNS FADGERSKNS LEKNSVGSTR TSEESNLGAE FPRVSQDLKD ALATLQQTFV VSDATKPDCP IVYASSGFFT MTGYSSKEIV GRNCRFLQGK
201: DTDQNEVAKI RDAVKTGKSY CGRLLNYKKN GTPFWNLLTV TPIKDDSGKT IKFIGMQVEV SKYTEGVNEK ELRPNGLPKS LIRYDARQKE KALGSITEVV
301: QTVKGPRSHI KSSQDASSGT DKEKPQVDFM LPKAADTESN ISTPGRYTPQ WDARGDVSQE LGKKSRKSSR LSLKGSKGRP SSISFPLENE ENVGPEIIMT
401: EVERTDSWER AERERDIRQG IDLATTLERI EKNFVITDPR LPDNPIIFAS DSFLELTEFT REEILGRNCR FLQGPETDQA TVQKIRDAIK EQKEITVQLI
501: NYTKSGKKFW NLFHLQPMRD QKGELQYFIG VQLDGSDHVE PLRNRLSEQT EKQSAKLVKA TATNVDEAVR ELPDANSRPE DLWALHSLPV YPRPHKRHSA
601: LWTAIHKVTA NGERLGLNNF KPVRPLGCGD TGRHRFVHLV ELKGTGDLFA MKAMDKSIML NRNKVHRACV EREVIALLDH PLLPTLYSSF QTETHVCLIT
701: DFCPGGELFA LLDRQPMKIF KEESARFYAA EVLIGLEYLH CLGIIYRDLK PENILLQADG HVVLTDFDLS FKTSCKPQVI KHPPSKRRSR STPPPTFVAE
801: PVSQSNSFVG TEEYIAPEII TGAGHSSAID WWALGILLYE MLYGRTPFRG KNRQKTFSNI LNKDLTFPSS IPVSLAARQV IHSLLNRDPA SRLGSNGGAS
901: EIKEHPFFRG IAWPLIRCMT PPPLDAPLQL IGKESGNKEI DWNDDGVLAH PMDLF

Best Arabidopsis Sequence Match ( AT5G58140.1 )
(BLAST)

001: MERPRAPPSP LNDAESLSER RSLEIFNPSS GKETHGSTSS SSKPPLDGNN KGSSSKWMEF QDSAKITERT AEWGLSAVKP DSGDDGISFK LSSEVERSKN
101: MSRRSSEEST SSESGAFPRV SQELKTALST LQQTFVVSDA TQPHCPIVYA SSGFFTMTGY SSKEIVGRNC RFLQGPDTDK NEVAKIRDCV KNGKSYCGRL
201: LNYKKDGTPF WNLLTVTPIK DDQGNTIKFI GMQVEVSKYT EGVNDKALRP NGLSKSLIRY DARQKEKALD SITEVVQTIR HRKSQVQESV SNDTMVKPDS
301: STTPTPGRQT RQSDEASKSF RTPGRVSTPT GSKLKSSNNR HEDLLRMEPE ELMLSTEVIG QRDSWDLSDR ERDIRQGIDL ATTLERIEKN FVISDPRLPD
401: NPIIFASDSF LELTEYSREE ILGRNCRFLQ GPETDQATVQ KIRDAIRDQR EITVQLINYT KSGKKFWNLF HLQPMRDQKG ELQYFIGVQL DGSDHVEPLQ
501: NRLSERTEMQ SSKLVKATAT NVDEAVRELP DANTRPEDLW AAHSKPVYPL PHNKESTSWK AIKKIQASGE TVGLHHFKPI KPLGSGDTGS VHLVELKGTG
601: ELYAMKAMEK TMMLNRNKAH RACIEREIIS LLDHPFLPTL YASFQTSTHV CLITDFCPGG ELFALLDRQP MKILTEDSAR FYAAEVVIGL EYLHCLGIVY
701: RDLKPENILL KKDGHIVLAD FDLSFMTTCT PQLIIPAAPS KRRRSKSQPL PTFVAEPSTQ SNSFVGTEEY IAPEIITGAG HTSAIDWWAL GILLYEMLYG
801: RTPFRGKNRQ KTFANILHKD LTFPSSIPVS LVGRQLINTL LNRDPSSRLG SKGGANEIKQ HAFFRGINWP LIRGMSPPPL DAPLSIIEKD PNAKDIKWED
901: DGVLVNSTDL DIDLF

Arabidopsis Description

PHOT2Phototropin-2 [Source:UniProtKB/Swiss-Prot;Acc:P93025]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.