Factsheet for VIT_06s0004g01780.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g04420.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51170.1	VIT_05s0020g04420.t01	AT4G14640.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29689	Soybean	cytosol	66.83	66.67
KRH24685	Soybean	cytosol	66.83	65.39
KRH23156	Soybean	cytosol	60.24	63.99
Bra018898.1-P	Field mustard	cytosol	44.63	63.76
CDY22830	Canola	cytosol, plastid	57.32	61.84
CDY25216	Canola	cytosol	57.32	61.84
Solyc11g061720.1.1	Tomato	cytosol	60.24	61.44
PGSC0003DMT400054224	Potato	cytosol	60.73	60.44
AT3G20830.1	Thale cress	cytosol, plastid	59.76	60.05
GSMUA_Achr5P22330_001	Banana	cytosol	45.61	59.55
CDY19600	Canola	plastid	58.29	59.31
CDY06386	Canola	nucleus, plastid	57.8	59.1
Bra035740.1-P	Field mustard	plastid	57.56	58.56
AT1G51170.1	Thale cress	plastid	57.32	58.17
Os08t0504800-01	Rice	cytosol	54.63	52.96
TraesCS7D01G243600.1	Wheat	cytosol	53.9	51.76
TraesCS7A01G244900.1	Wheat	cytosol	54.15	51.63
TraesCS7B01G146500.1	Wheat	cytosol	53.66	51.4
GSMUA_Achr7P02080_001	Banana	cytosol, mitochondrion	49.51	51.26
EER99080	Sorghum	cytosol, nucleus, peroxisome	53.9	50.46
Zm00001d020927_P001	Maize	cytosol	52.93	49.32
TraesCS5A01G263600.1	Wheat	cytosol	51.95	48.52
TraesCS5B01G263000.1	Wheat	cytosol	51.95	48.41
EES15407	Sorghum	cytosol	52.2	48.31
Zm00001d031426_P001	Maize	cytosol	51.71	47.96
Os09t0486700-01	Rice	cytosol	53.17	47.91
Zm00001d006017_P001	Maize	cytosol	50.98	47.72
HORVU7Hr1G050240.1	Barley	mitochondrion	53.9	47.02
TraesCS5D01G271200.1	Wheat	cytosol	52.2	45.73
HORVU5Hr1G072930.1	Barley	mitochondrion	50.98	44.95
TraesCS7A01G426500.1	Wheat	cytosol	13.9	42.54
TraesCS5A01G192800.1	Wheat	cytosol	13.66	41.48
VIT_03s0038g04210.t01	Wine grape	cytosol	34.88	14.29
VIT_06s0004g03700.t01	Wine grape	cytosol, plastid	34.63	14.14

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100241690	wikigene:100241690	MapMan:18.4.6.5	Gene3D:3.30.200.20	InterPro:AGC-kinase_C
EMBL:AM457890	ProteinID:CAN67877	ProteinID:CAN67877.1	ProteinID:CCB43729	ProteinID:CCB43729.1	UniProt:F6GU87
EMBL:FN594951	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005886	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016301	GO:GO:0016310
GO:GO:0016740	GO:GO:0019538	GO:GO:0035556	InterPro:IPR000719	InterPro:IPR000961	InterPro:Kinase-like_dom_sf
EntrezGene:LOC100241690	wikigene:LOC100241690	PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011
PFscan:PS51285	PANTHER:PTHR24351	PANTHER:PTHR24351:SF107	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220
SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	TIGR:TC56752	UniParc:UPI000210865F	ArrayExpress:VIT_06s0004g01780	EnsemblPlantsGene:VIT_06s0004g01780
EnsemblPlants:VIT_06s0004g01780.t01	RefSeq:XP_002282983	RefSeq:XP_002282983.2	:	:	:

Description

No Description!

Coordinates

chr6:-:2201083..2202669

Molecular Weight (calculated)

46743.3 Da

IEP (calculated)

9.970

GRAVY (calculated)

-0.375

Length

410 amino acids

Sequence
(BLAST)

001: MENASPELHL DDLPAIQVLG KGAMGTVFLV HDRLADPSAL SPFALKVVDK FSHHTKLDAD RRARWEISVL KRLSNPEHPF LPTLIGSLET PEFLAWAVPF
101: CPGGDLNVLR YHQTDRVFSP SVIRFYVAEI ICALEHLHSM GIAYRDLKPE NVLIQQSGHV TLTDFDLSRS LKPRTVKTLI TSDPIELDPP EIRQRHRRNL
201: TRLVTIVSDK GGLKKAKSAR VSPVSRRKQS FSNGERSNSF VGTEEYVSPE VVRGDGHEFA VDWWALGILT YEMLYGTTPF KGKNRKETFR NVLMKTPEFI
301: GKRTALTDLI GRLLEKDPTK RLGYNRGASE IKQHVFFRGL QWDKLTEVLR PPFLPSMDDE LLTENITADE FDIREYFQKT KVKPSLTPST SSRSMFSTIF
401: SNLVRKWLKK

Best Arabidopsis Sequence Match ( AT3G20830.1 )
(BLAST)

001: MEPSPSSPPS SPPEILDLDS IKALKILGKG ATGTVFLAHD VVSTSSSSSP FAVKLVPKSS ASSLRRARWE IEVLRRLSVD SNQNPFLPRL LASFESPEYF
101: AWAVPYCSGG DLNVLLHRQN DGVFSSSVIR FYVAEIVCAL EHLHTMGIAY RDLKPENILI QQSGHVTLTD FDLSRSLKKP LRPHFYQPDP ELIIDRKKSR
201: SFSRLISPTA EKNKTGLKKT RSARVNPINR RKTSFSSGER SNSFVGTDEY VSPEVIRGDG HDFAVDWWAL GVLTYEMMYG ETPFKGKSKK ETFRNVLMKE
301: PEFAGKPNDL TDLIRRLLVK DPNRRLGCHR GAAEIKELAF FAGVRWDLLT EVLRPPFIPL RDDGELTVGG FDIREHFEKL RTTPSSAPPS PLRSPPHVCR
401: KNDPFIEF

Arabidopsis Description

UCNLSerine/threonine-protein kinase UCNL [Source:UniProtKB/Swiss-Prot;Acc:Q9LT38]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.